Top cofit genes for mRNA_2646 from Rhodosporidium toruloides IFO0880

11014: HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058

Rank	Hit	Name	Description	Conserved?	Cofitness
1	mRNA_3632	12000	HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112	no	0.89
2	mRNA_2515	10883	KOG0035 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily)	no	0.88
3	mRNA_1822	10190	KOG0627 Heat shock transcription factor	no	0.81
4	mRNA_7912	16280	K11434 PRMT1 type I protein arginine methyltransferase	no	0.81
5	mRNA_1109	9477	HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701	no	0.79
6	mRNA_68	8436	K12599 SKI2, SKIV2L antiviral helicase SKI2	no	0.79
7	mRNA_5737	14105	HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157	no	0.79
8	mRNA_5667	14035	K11233 SSK1 osomolarity two-component system, response regulator SSK1	no	0.79
9	mRNA_4889	13257	HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701	no	0.79
10	mRNA_3423	11791	KOG3655 Drebrins and related actin binding proteins	no	0.78
11	mRNA_3886	12254	K14298 RAE1, GLE2 mRNA export factor	no	0.77
12	mRNA_4422	12790	BLAST Regulator of nonsense transcripts UPF2 [Grifola frond...	no	0.77
13	mRNA_5053	13421	Hypothetical Protein	no	0.77
14	mRNA_165	8533	K12602 WDR61, REC14, SKI8 WD repeat-containing protein 61	no	0.77
15	mRNA_5856	14224	K03357 APC10, DOC1 anaphase-promoting complex subunit 10	no	0.76
16	mRNA_225	8593	KOG0619 FOG Leucine rich repeat	no	0.76
17	mRNA_3914	12282	HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350	no	0.76
18	mRNA_5546	13914	Hypothetical Protein	no	0.75
19	mRNA_2302	10670	HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701	no	0.74
20	mRNA_1127	9495	K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase	no	0.74