Top cofit genes for mRNA_3220 from Rhodosporidium toruloides IFO0880

11588: KOG0686 COP9 signalosome, subunit CSN1

Rank	Hit	Name	Description	Conserved?	Cofitness
1	mRNA_3537	11905	Hypothetical Protein	no	0.77
2	mRNA_856	9224	KOG0828 Predicted E3 ubiquitin ligase	no	0.77
3	mRNA_5862	14230	K14998 SURF1, SHY1 surfeit locus 1 family protein	no	0.73
4	mRNA_7637	16005	K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1	no	0.70
5	mRNA_4986	13354	K17943 PUM pumilio RNA-binding family	no	0.70
6	mRNA_5754	14122	KOG1721 FOG Zn-finger	no	0.69
7	mRNA_97	8465	KOG2234 Predicted UDP-galactose transporter	no	0.69
8	mRNA_2136	10504	K01613 psd, PISD phosphatidylserine decarboxylase	no	0.69
9	mRNA_5586	13954	HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874	no	0.69
10	mRNA_6613	14981	K08740 MSH4 DNA mismatch repair protein MSH4	no	0.68
11	mRNA_4203	12571	K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2	no	0.68
12	mRNA_4663	13031	K18619 CORO7 coronin-7	no	0.68
13	mRNA_5469	13837	HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321	no	0.68
14	mRNA_4020	12388	KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)	no	0.67
15	mRNA_7894	16262	HMMPfam-Eisosome component PIL1-PF13805	no	0.66
16	mRNA_4905	13273	KOG2371 Molybdopterin biosynthesis protein	no	0.66
17	mRNA_1618	9986	Hypothetical Protein	no	0.66
18	mRNA_7324	15692	K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase	no	0.65
19	mRNA_2865	11233	SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717	no	0.65
20	mRNA_3959	12327	K10401 KIF18_19 kinesin family member 18/19	no	0.65