Top cofit genes for mRNA_3595 from Rhodosporidium toruloides IFO0880

11963: K09838 ZEP, ABA1 zeaxanthin epoxidase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	mRNA_5668	14036	K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	no	0.74
2	mRNA_5267	13635	KOG2504 Monocarboxylate transporter	no	0.73
3	mRNA_3361	11729	K11247 SH3GL endophilin-A	no	0.73
4	mRNA_5625	13993	KOG1611 Predicted short chain-type dehydrogenase	no	0.72
5	mRNA_4041	12409	HMMPfam-Sds3-like-PF08598	no	0.72
6	mRNA_8154	16522	HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179	no	0.72
7	mRNA_2961	11329	ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701	no	0.71
8	mRNA_4262	12630	KOG2688 Transcription-associated recombination protein - Thp1p	no	0.70
9	mRNA_5052	13420	Hypothetical Protein	no	0.70
10	mRNA_1951	10319	HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701	no	0.70
11	mRNA_2219	10587	Hypothetical Protein	no	0.70
12	mRNA_7677	16045	Hypothetical Protein	no	0.69
13	mRNA_5948	14316	HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356	no	0.69
14	mRNA_5288	13656	HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785	no	0.69
15	mRNA_5313	13681	KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15	no	0.69
16	mRNA_3957	12325	KOG0254 Predicted transporter (major facilitator superfamily)	no	0.69
17	mRNA_6734	15102	Hypothetical Protein	no	0.68
18	mRNA_8216	16584	K14376 PAP poly(A) polymerase	no	0.68
19	mRNA_3660	12028	HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540	no	0.68
20	mRNA_6662	15030	HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928	no	0.68