Top cofit genes for mRNA_3946 from Rhodosporidium toruloides IFO0880

12314: K06176 truD, PUS7 tRNA pseudouridine13 synthase
SEED: tRNA pseudouridine 13 synthase (EC 4.2.1.-) @ U2 snRNA pseudouridine 35 synthase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	mRNA_4727	13095	Hypothetical Protein	no	0.89
2	mRNA_2418	10786	HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445	no	0.88
3	mRNA_3271	11639	K07126 K07126 uncharacterized protein	no	0.86
4	mRNA_6649	15017	K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3	no	0.84
5	mRNA_7663	16031	K03305 TC.POT proton-dependent oligopeptide transporter, POT family	no	0.84
6	mRNA_3558	11926	K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10	no	0.83
7	mRNA_7286	15654	K17508 PTC7, PPTC7 protein phosphatase PTC7	no	0.83
8	mRNA_7195	15563	KOG0519 Sensory transduction histidine kinase	no	0.83
9	mRNA_2597	10965	Hypothetical Protein	no	0.83
10	mRNA_2781	11149	K09506 DNAJA5 DnaJ homolog subfamily A member 5	no	0.82
11	mRNA_2889	11257	K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7	no	0.82
12	mRNA_2865	11233	SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717	no	0.82
13	mRNA_5483	13851	KOG1339 Aspartyl protease	no	0.82
14	mRNA_1108	9476	KOG1134 Uncharacterized conserved protein	no	0.81
15	mRNA_3295	11663	K14324 SAP18 histone deacetylase complex subunit SAP18	no	0.81
16	mRNA_8041	16409	K13350 PXMP4, PMP24 peroxisomal membrane protein 4	no	0.80
17	mRNA_5107	13475	K03130 TAF5 transcription initiation factor TFIID subunit 5	no	0.80
18	mRNA_8116	16484	K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase	no	0.80
19	mRNA_6644	15012	HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744	no	0.80
20	mRNA_6923	15291	Hypothetical Protein	no	0.80