Top cofit genes for mRNA_4144 from Rhodosporidium toruloides IFO0880

12512: K01669 phrB deoxyribodipyrimidine photo-lyase
SEED: Cryptochrome

Rank	Hit	Name	Description	Conserved?	Cofitness
1	mRNA_3817	12185	SUPERFAMILY--SSF52047	no	0.80
2	mRNA_4138	12506	HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238	no	0.79
3	mRNA_3033	11401	BLAST related to transcription factor medusa [Melanopsichiu...	no	0.77
4	mRNA_3419	11787	K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase	no	0.76
5	mRNA_6952	15320	K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48	no	0.76
6	mRNA_4744	13112	HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994	no	0.75
7	mRNA_8213	16581	KOG1590 Uncharacterized conserved protein	no	0.74
8	mRNA_600	8968	K17785 IMMT, FCJ1, MNOS2 mitofilin	no	0.71
9	mRNA_8392	16760	ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197	no	0.71
10	mRNA_4898	13266	HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474	no	0.70
11	mRNA_3079	11447	HMMPfam-DNA polymerase Ligase (LigD)-PF13298	no	0.69
12	mRNA_7781	16149	K18664 SLH1 antiviral helicase SLH1	no	0.69
13	mRNA_2224	10592	KOG2653 6-phosphogluconate dehydrogenase	no	0.68
14	mRNA_4320	12688	K03255 TIF31, CLU1 protein TIF31	no	0.68
15	mRNA_5206	13574	HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236	no	0.67
16	mRNA_2238	10606	K20813 TDG thymine-DNA glycosylase	no	0.67
17	mRNA_4011	12379	HMMPfam-Retinoic acid induced 16-like protein-PF10257	no	0.67
18	mRNA_2173	10541	K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6	no	0.67
19	mRNA_4278	12646	HMMPfam-Voltage-dependent anion channel-PF03595	no	0.67
20	mRNA_7166	15534	K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase	no	0.67