Top cofit genes for mRNA_7901 from Rhodosporidium toruloides IFO0880

16269: KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	mRNA_7090	15458	Hypothetical Protein	no	0.76
2	mRNA_4629	12997	K11971 RNF14, ARA54 E3 ubiquitin-protein ligase RNF14	no	0.76
3	mRNA_1144	9512	K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial	no	0.75
4	mRNA_1355	9723	SUPERFAMILY--SSF50685	no	0.75
5	mRNA_4392	12760	KOG3069 Peroxisomal NUDIX hydrolase	no	0.74
6	mRNA_2087	10455	K19792 FET4 low-affinity ferrous iron transport protein	no	0.74
7	mRNA_5141	13509	K12198 CHMP5, VPS60 charged multivesicular body protein 5	no	0.73
8	mRNA_7532	15900	K01896 ACSM medium-chain acyl-CoA synthetase	no	0.73
9	mRNA_6828	15196	K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4	no	0.73
10	mRNA_877	9245	K07425 CYP4A alkane 1-monooxygenase	no	0.72
11	mRNA_843	9211	KOG2262 Sexual differentiation process protein ISP4	no	0.72
12	mRNA_6484	14852	HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701	no	0.72
13	mRNA_8339	16707	K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase	no	0.72
14	mRNA_348	8716	KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily	no	0.71
15	mRNA_5626	13994	KOG1611 Predicted short chain-type dehydrogenase	no	0.70
16	mRNA_8249	16617	SUPERFAMILY--SSF52047	no	0.70
17	mRNA_5384	13752	HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098	no	0.69
18	mRNA_3053	11421	K06889 K06889 uncharacterized protein	no	0.69
19	mRNA_7737	16105	HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909	no	0.68
20	mRNA_1545	9913	Hypothetical Protein	no	0.67