Protein Info for mRNA_1633 in Rhodosporidium toruloides IFO0880

Name: 10001
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 transmembrane" amino acids 130 to 151 (22 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 225 to 248 (24 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details amino acids 336 to 358 (23 residues), see Phobius details amino acids 367 to 385 (19 residues), see Phobius details amino acids 397 to 419 (23 residues), see Phobius details amino acids 425 to 451 (27 residues), see Phobius details amino acids 463 to 484 (22 residues), see Phobius details amino acids 490 to 511 (22 residues), see Phobius details PF07690: MFS_1" amino acids 141 to 450 (310 residues), 68 bits, see alignment E=3.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (524 amino acids)

>mRNA_1633 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MTAAHLPPLSASTTSESTSPFYPGEPYSPTATPESSPSSRSLSLSGSTPTPSRPLSLVNE
KVFDTPLDGPTRVGSPLEGPTRVGSPAPSVFEEKLKGEVVADLEKQGYPVSTEESAPAPE
EEYPEGGLRAWLAVFGSTLVLLCTFGLSNSFGTFLAEYKTHQLASYPPSTISWIGSSHLF
VTFASAFNAGVLFDKGYFRYQLVAGSVGWLIGIFTLSLAKTFVQIFLAQAICMGLSLGIM
FGPCLSILGTYFRRKRAFVVGIAASGTAIGAVVFPVLLGRLFEEKGFAFAVRVAGFLMLA
LLVIANIVIRPRAISKTVVRAPLASTMRRIARDPAAWLVYGGVFGTYVSTFIPLFYVVSY
AQKYSTNAAVATYSLSIINALAFFSRIGSGLIADRLGTFNTAIPLSFLVGVLTFAMIGAT
STPALVVFLVLFGIAQGGWISVSASVFMTLANDVSEIGLRSGIGFFFVALATLIGSPIAG
ALLTATNGSYVAALCFGGGMAMVGTVFLVFARGIQVRRKSSSVV