Protein Info for mRNA_1640 in Rhodosporidium toruloides IFO0880

Name: 10008
Annotation: KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 PF00106: adh_short" amino acids 34 to 176 (143 residues), 71.3 bits, see alignment E=1.5e-23 PF08659: KR" amino acids 34 to 154 (121 residues), 53.6 bits, see alignment E=5.5e-18 PF01370: Epimerase" amino acids 36 to 227 (192 residues), 22.2 bits, see alignment E=1.8e-08 PF13561: adh_short_C2" amino acids 42 to 179 (138 residues), 49.6 bits, see alignment E=8e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>mRNA_1640 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (Rhodosporidium toruloides IFO0880)
MLTILSDITGIGAEKRTPYDPAKELPPGSLEGRVYLVTGGHGGIGLETTRFLALAGARIL
IASRSSSKVHSAIDFLSSTHGESIRSKLEYVELDLASLASVKRCAEWVLEREQRLDGVVC
NAGIMALPYKLTEDGVEQQFQVNVLGHWLLVNKLLPLLEKTHQLTGQISRVVVLSSFAHN
FISLYPFSSPSLSSPSALTKTHHSPWLRYSVSKLAGIWFARELDRRGKERGVRSVSVHPG
FVSSNLYSTHPLARPLLRFFIPPSSGSYTTLFALTSPTIEERNWWGEYLVPFGKRKEPRG
GKDRRREEEGWRVCEAVCRERVGGI