Protein Info for mRNA_1650 in Rhodosporidium toruloides IFO0880

Name: 10018
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 transmembrane" amino acids 117 to 136 (20 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 375 to 396 (22 residues), see Phobius details amino acids 408 to 431 (24 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 466 to 488 (23 residues), see Phobius details amino acids 504 to 524 (21 residues), see Phobius details amino acids 536 to 555 (20 residues), see Phobius details PF07690: MFS_1" amino acids 143 to 405 (263 residues), 44 bits, see alignment E=1.5e-15 TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 153 to 565 (413 residues), 288.6 bits, see alignment E=4.3e-90 PF00083: Sugar_tr" amino acids 155 to 570 (416 residues), 310.7 bits, see alignment E=1.9e-96

Best Hits

KEGG orthology group: None (inferred from 50% identity to scm:SCHCODRAFT_56704)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>mRNA_1650 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MTPEKEKHSLRQLTSHDSHRDSGSLTEVGSGTGMEARKRENQLLANPLMNKSESELCRGV
DEFVERTGMTDIRELLYRAALVAQDRHNFERLHQLSEEEKVFLREEKTHKWRQTKTLYWQ
IFMCSMGAVVQGMVNGANLYYPRQFGIGAKTRHDTILVGLVNAAPYLCSAVFSCWLTYPL
SKYLGRRGAIFWSTLCAGLGCIWGAVTNTWWHLFISRLFLGLGIGPKSATVPILAAEISP
AAIRGSLEMQWQTWTAFGIMLGTVSSLIFQNVPDKPGITGLNWRLMLGSACLPAIIVCSQ
VYLTPESPRWLIGKGRYKQAFESLQKLRRSDIQAAVDFYYTAKCIEMEEEIRSHHKRSRF
VELFTVPRNRRAARAAAVVMFMQQFCGINAIAYYSSVIFENAGTSEKVALLGSFGYGCIN
WVFSAPAFFTIDSYGRRSLLLFTLPFLSLFMFIAGSGFYLQGDKNQLAMVVTGVYIFAAF
YGPGAGPVPFSYSAEVFPLQVREIGMGLATAITWFFNFVNALVFPLQIQSWGSGPAFYWF
GCWNIILWFLVLMFCPETKQFTLEELDEVFSMSTSRQVAYGLASPAYWFRRYVLRQKVHR
VPLHEYHPSEEKDRPMVEHREKV