Protein Info for mRNA_1658 in Rhodosporidium toruloides IFO0880

Name: 10026
Annotation: K02893 RP-L23Ae, RPL23A large subunit ribosomal protein L23Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF03939: Ribosomal_L23eN" amino acids 12 to 59 (48 residues), 75.4 bits, see alignment E=3.2e-25 PF00276: Ribosomal_L23" amino acids 70 to 129 (60 residues), 58.6 bits, see alignment E=6.7e-20

Best Hits

Swiss-Prot: 72% identical to RL25_PUCGR: 60S ribosomal protein L25 from Puccinia graminis

KEGG orthology group: K02893, large subunit ribosomal protein L23Ae (inferred from 82% identity to cnb:CNBC6880)

Predicted SEED Role

"LSU ribosomal protein L23Ae (L23p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (150 amino acids)

>mRNA_1658 K02893 RP-L23Ae, RPL23A large subunit ribosomal protein L23Ae (Rhodosporidium toruloides IFO0880)
MSTGKAAAKPQDAKAKAAKKAALKGTSGTALRKVRTSVTFHRPKTLALPRAPKYQRKAVA
SLPRMDAFRTIVHPLNTESAMKKIEDHNTLVFIVDVKANKRQIKDAVRKLYEVKPLKINT
LIRPDGRKKAFVRLEADVDALEVANKIGFI