Protein Info for mRNA_1667 in Rhodosporidium toruloides IFO0880

Name: 10035
Annotation: K11527 K11527 two-component system, sensor histidine kinase and response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1632 TIGR00229: PAS domain S-box protein" amino acids 922 to 1045 (124 residues), 50.9 bits, see alignment 8.1e-18 PF00989: PAS" amino acids 926 to 1034 (109 residues), 28.1 bits, see alignment 7.7e-10 PF08448: PAS_4" amino acids 930 to 1037 (108 residues), 42.7 bits, see alignment 2.7e-14 PF13426: PAS_9" amino acids 938 to 1034 (97 residues), 27.5 bits, see alignment 1.4e-09 PF08447: PAS_3" amino acids 947 to 1031 (85 residues), 66.3 bits, see alignment 1.2e-21 PF00512: HisKA" amino acids 1194 to 1258 (65 residues), 47.9 bits, see alignment (E = 5e-16) PF02518: HATPase_c" amino acids 1303 to 1418 (116 residues), 100.6 bits, see alignment 3.6e-32 PF00072: Response_reg" amino acids 1445 to 1558 (114 residues), 89.3 bits, see alignment 8.7e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1632 amino acids)

>mRNA_1667 K11527 K11527 two-component system, sensor histidine kinase and response regulator (Rhodosporidium toruloides IFO0880)
MTRPPPFSRANSSPTFPASVSPLPADSREPKTLHAAVLHQLPLPHLVFDSFLRLHALNDA
ARQVFGVTSGHGGPQPGGEAFPPGGADVFFCVTPEMQTGGGSAADKIRRELDRLAKHQEE
SFGASEWAWSEGDKVELKSGRVPGLRWTAQAKVTHFVTPEVANDSAAEISLETVRRSSYI
GSTPDEEEELPDWISKGRRDTVVPSRITARAPWYSVLLLRPWREPQYLGPAPDKVLHHRR
SFSLDTPLATQVPSFAPSYVPVDRSSDMLPPPASAPSQRASLAPPDQTPTLGSTLAFQNP
FSQSTLAQRRGSNASLAASRAVAAGESDATKAGAAVSGAALPGGMAALRLSENTLAEAQA
ISPGTAAKSTAVGSGGTISSSGSAGSAGATSLLSSATATTAGTSPPSRRGSGASMSAPKV
IPEALRGMGISVSSAGIQLSQSTPVEKPRSARASMLSSAPLELDESAITTPTSIQPPDGS
TPTLDRPAPMSLHLPPHKHSSHPLAYSINLSPASSSSTPSSIASSVPPPLPSPRPTSLPP
LPLKPPTPAPDMPALLKFAAIANLPNTGVIIANTELSSGYVNATARELLMGVPASDGIAT
DSPSRDANGVKEEWWDLGHWSVEDEPWSSVSNGTQVSSASQPFFSPSAELRANPLDANDL
TFKSIIRSGEAVSVERGKGTAGSGLRIGQPGETFRLRTTLAGILARSLVSDERKKAALGK
AGPSTGGKSNVFRSFAPSPSGLRSPGVESNASSNGSGSTTSGHPPQFIAAGGVGAQGKKP
YKVFDPAFGQRMIDPFEPLLEMTARRGQMPPSVNLDDSDEEEDGTSAANGMIVGVEVEVW
EADPASALRQNSFVAAEPELVAQRRKRVRRRILEVTASPIFAPRNDGSKHHLGGVLLVRD
VTDDRKRWESRGELSSKKKKGKEGYFKQILDNLPQLIWTTSKLGSHTYYNKVWYDYTGLE
PEQSLGLGWQSPFHPDDMPSTLKAWSHSLETGEPYAVEYRCRRYDGEWRWMLGRALPYRD
ADGAIQGWFGTCTDFDELYHMREKLRSTIQQNDAVVQGAGCLLIAVDTQYRVTFFEGAHR
DGVLAEAQVVGRVEGQDYRVLAPVPELLAGVEKVIQGEESSMQVEWQQRQRSYRCLLTPL
TEHRDGTTRINGCIIVAHDITDLVSTQARLQQSYEERARLQVAETAATEASRLKSEFLAL
TSHELRTPIAHMLGLSELLLAEDLTESQKNLASQILRSGDVLLEMIGQVLDMGKVEAGKL
DLEVRPFSLNDLSSDARLFATAASKKGLDFVEEVDDFKAPVQGDMPRLRQVLTNLLSNAI
KFTRAGSVTLRVKRVKEDAESVTVRWQVQDTGIGVKKEAIGSLFKPFHQADVSTSRQFGG
TGLGLSISKNLIELMGGSIRLESEYGVGTTMTVDLKLPKVPELLVDQAAATLASEEDIRR
DDIWVLVVDDNKLNRDIITRLLIKMGFNVDSVSSGYEALEHVEKKAYDVVLMDHQMDGLD
GLETTVRIRKSANPQVADLKVIALTASALKGDQEKFLASGADGYLSKPVRSAVLRSTILR
TLQTPHPPNLVAAVSAADAAAKIVSASRLSEVTASVPSTDAKVNGEAQAGLDESVPPVRR
RPSHPSYGDGSE