Protein Info for mRNA_1692 in Rhodosporidium toruloides IFO0880

Name: 10060
Annotation: K20292 COG5 conserved oligomeric Golgi complex subunit 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 887 PF10392: COG5" amino acids 21 to 173 (153 residues), 69.7 bits, see alignment E=1.5e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (887 amino acids)

>mRNA_1692 K20292 COG5 conserved oligomeric Golgi complex subunit 5 (Rhodosporidium toruloides IFO0880)
MPSLAPPAAKPTEDPYTQYSTFLHPNFEADAFAHAVLNGEEYPAPSEGSNGVPAGGSGFM
KGLIGENGTGDVSAALARLNFGVEDLNRQLKAEVTKNHSSLLLQAASLGGLDGDLAEVRR
GLAEVEGGVTRLKRKIAAPHDALASSLLLLTRLRRAASLARRAQRFTFLARRLEGQMSEI
DGAAGAGAVALNGEQASERRERAMAEAALTLAEIESLLTAGEGVEAAEDDPEALLPIRSL
NAIEAAVPAVELSRRRVVEEMESSVQRGLDEMDHPLLASSLQTAHNLSVLPALVENLVAD
LNDLVAGKVKACFDMASLAREIGGKEGPVNAASAFVYKSRTRNEPTQATMPQWAAAFWAR
LESLITDLGSICIKAYTLEKVLKLKKDQTTQASFLDEAMAVLDNKPSVLFWTSLAQAFET
QAKEAVRSSNFVQTTLSTGYPRLLRLFQEFFSRIAVHTDTVYTLAQQSPETVLVLRAIQP
FETLYLTRSTNRLTEAVSSAFSISSSLTSSFSSRPPAMPTANEGLTTARAIVNELDAARF
DPLLAKAIAKGASRAVEAFVLRAEALVAHDHAATSLLGPLATPSQHQNADLTSALYHLWL
PLDRALPDHTESVRETLRPAVNRVRAVYTAIVNPLILAIRREFSALLARMHRVDYSKEVD
PAHPPGPMSVGGASSYMNDLTEKLALIKDEIFAAYRVGELIKEWTIDLARFTVQTFLLHA
SLVHPIGESGKLKLTSDTTALEFAVNQYLAAQGLTLGNMGDQFKALRAFRPLLFLDLPSL
ADPTKTSDVPTLILLHHLLSRANLPNALPLPYELHSWTEAEYVRWLNEHREEERMGMLES
VVRRWEEQKAKREEGDGSGGEQDDEADKVVGLIRQVLARTAGATGHK