Protein Info for mRNA_1705 in Rhodosporidium toruloides IFO0880

Name: 10073
Annotation: K03264 EIF6 translation initiation factor 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 TIGR00323: putative translation initiation factor eIF-6" amino acids 4 to 225 (222 residues), 274.2 bits, see alignment E=3.1e-86 PF01912: eIF-6" amino acids 4 to 204 (201 residues), 270.1 bits, see alignment E=4.6e-85

Best Hits

Swiss-Prot: 76% identical to IF6_SCHPO: Eukaryotic translation initiation factor 6 (tif6) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K03264, translation initiation factor 6 (inferred from 81% identity to lbc:LACBIDRAFT_297224)

Predicted SEED Role

"Eukaryotic translation initiation factor 6" in subsystem Translation initiation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>mRNA_1705 K03264 EIF6 translation initiation factor 6 (Rhodosporidium toruloides IFO0880)
MAIRARFENSSDVGVFASLTNSYCLTSVSTGSSNFYSTFEAELGDVVPVVQTSIGGTRII
GRLVAGNRHGLLVPNSTTDQELQHLRNSLPETVAIQRIEERLSALGNIIAANDYVALVHP
DIDRETEEIIADVLKVEVFRQTIADNVLVGSYCRISNQGALVHPKTSVQDQDELSSLLQV
PLVAGTVNRGSDVIGAGMIVNDWTAFTGLDTTATEISVIESVFKLAGQDQNAIGGMRDTL
VESFA