Protein Info for mRNA_1709 in Rhodosporidium toruloides IFO0880

Name: 10077
Annotation: K16302 CNNM metal transporter CNNM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 62 to 85 (24 residues), see Phobius details amino acids 88 to 89 (2 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details PF01595: DUF21" amino acids 13 to 184 (172 residues), 104.5 bits, see alignment E=2.8e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (513 amino acids)

>mRNA_1709 K16302 CNNM metal transporter CNNM (Rhodosporidium toruloides IFO0880)
MGRKEFILKLVFSVVFVLLGGVFSGLSLGLMGLDSMNLQGESLLAASGPPQDRIDAQKVL
SLLSHGRHFVLVCLLLSNVIVNETLPVFLDSLIGGGGLAAIVISSAAIVIFGEVLPQALC
AQYGLRVGAKCVGFVRVLMYLESPICYPTAKLLDWLLGSHTTHLYRREELKTLVHLHGEG
KVLAGEEGELVGGVLGLAERVVGEEARRTRETYAVSDGLRICDVDLKQLLLRRQHFLPVR
RAKTALGASDEKKEEPFVGYLRVEELIEAQSRPNDLVRSLALHPLVQVLPSTPIIDCIAY
LKREDPEAVLLVSISAIDGADALGFAVLDDLLKAILHDEPQKAHSRAVSLGATARSALSR
PPRASASIGLSRFVSGIVDRHFTHRASSSQLSFRLDSSDEESHPFSRSRTSTASYRPLAS
SPNSHHRTTSSLSRFSVVPTPPGSAPAKRAGWDGRGGGFKFPTPDGSPVGEEVETFALGD
MDDEEGREDSGFGDGDELSGKGGLDPLGIECGR