Protein Info for mRNA_1711 in Rhodosporidium toruloides IFO0880

Name: 10079
Annotation: K01887 RARS, argS arginyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 635 PF00750: tRNA-synt_1d" amino acids 160 to 498 (339 residues), 374 bits, see alignment E=6.7e-116 TIGR00456: arginine--tRNA ligase" amino acids 162 to 635 (474 residues), 482.3 bits, see alignment E=8.8e-149 PF05746: DALR_1" amino acids 512 to 635 (124 residues), 69.1 bits, see alignment E=3.8e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (635 amino acids)

>mRNA_1711 K01887 RARS, argS arginyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MTTLPPFPLPATPSIPDEHLASTPALDLFKLAAAEFIHSVLPEVDVEKAFEGVESGKTGK
NVQGDFTVAVPRFRLKAKPNEVAEKLVAAFKPTPYLASITANGAFVFFNCQVNALASLVL
NQVNTQTYLTPDEDHSALSTFANLSLSDSGADKPPAGLKLLKKNGYGTNQSGKGKNIIVE
FSSPNIAKPFHAGHLRSTIIGAFLANLYEANGYNVLRMNYLGDWGKQFGILAVGFERYGS
EEELEKDAITHLYDVYVKINKDGETDESIHDRAREFFVKMEAGDEEAVSLWKKFRDLSIV
KYKETYARLNIYFDLYSGESQVSQKAQTDALEALQKSGIVEESQGALIVDLRKYKLEKTV
VRKKDGTSVYITRDIGGAVERYEKYKFDKMVYVVASQQDLHLAQFFKVLDLMGYDWAKTL
QHVNFGMVLGMSTRKGTAVFLEQILDESKRVMHDVMRKNEDKYAAIEDPEYTSDKLGITA
VKVQDMSGKRINNYEFKWERMTSFEGDTGPYLQYAHVRLSSVERKNAPDVVLPPPAERPS
AIDTSLLTEPKAREILLLLGQYPDVVRAALKSLEPSTICTFAFRLSHLISSAWETLIVKG
QPRDVALARLWLYVSAKDVLGSAMRLLTLEPLERM