Protein Info for mRNA_1712 in Rhodosporidium toruloides IFO0880

Name: 10080
Annotation: KOG2131 Uncharacterized conserved protein, contains JmjC domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 PF13621: Cupin_8" amino acids 25 to 280 (256 residues), 64.2 bits, see alignment E=1.6e-21 PF02373: JmjC" amino acids 169 to 278 (110 residues), 46.7 bits, see alignment E=4.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>mRNA_1712 KOG2131 Uncharacterized conserved protein, contains JmjC domain (Rhodosporidium toruloides IFO0880)
MFTPLNATMTDAIPLLTESECSYAHFRQHHLLPNKPCLISPSLVEDWQIKRRIARGGGAL
DWVYLQESLGRFEAVCVDCEGRDEGEESDEAEVRTFGGLLDLWKAGKGRTKYLKDWHLPL
LVYREAERLEKGKGKERVREELYEVPRLWLDDWMNECEGSEGDDDFRFVYAGGGDTFTPL
HRDVYCSYSISTQLYGRKRWYLFPPSCTPHIRPLIAEAERNDTRVNCDEWSDERKEEFRR
LGMMVVEQKEGQSIFIPSGYYHSVHNLTHPTLSLNHNWLNSHNLPAVYRSLTDEVERCRV
AIEDVREMLVEQARRKGEGEEGWKGEWEKAVDELVERSEGWSWPKFWRMTLNTLQNLEVP
LSILKERASSSRWPLIPHNARPPTSFVLDQVRPLVLDFQQRHEAEWRWLPGLEQVLEDVE
KDLGRLEGVVEAGETSEGKDEAGLTSGNST