Protein Info for mRNA_1716 in Rhodosporidium toruloides IFO0880

Name: 10084
Annotation: K14799 TSR1 pre-rRNA-processing protein TSR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 905 PF08142: AARP2CN" amino acids 276 to 368 (93 residues), 71.8 bits, see alignment E=4.1e-24 PF04950: RIBIOP_C" amino acids 569 to 872 (304 residues), 365.2 bits, see alignment E=2.8e-113

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (905 amino acids)

>mRNA_1716 K14799 TSR1 pre-rRNA-processing protein TSR1 (Rhodosporidium toruloides IFO0880)
MSGHSHKPHLKQSNKAFKSKHASKSTLRDQAKGRTHRPNTKDPASKAAKAASQKVQAKNL
KVNRRNHAKQVVKKKRDLLEEQKGIFQGRNRNGERVQRVVAVVPMTEDVSALETAEMLAQ
AVGGQLTGTEGYRSLDVPKFHNQSLRFLLLPPASRPDALFPILDAAAAADFVIVALSSEQ
EVDAQGETVLRCLTGLGVGGANGGVVGVVKDLPGGNPTLASSTRLSLQSFLTHFFPSIDR
IHCVSSMHSSSSASTSASAMSTDSSAASSAPTPSSEATLIVRGLCEKTPKGLRWRESRPR
VLAERVAWSKNAQAEPAAQEAEAPSGFEGEELGTLAVEGVVRGSRMSANRLVHLQGWGDF
KIEKIVLAPPARPTKRSAAAPADTMSVDGSTPSTAPFEPLSTPDDDADSLASTNIPDDDD
FGLDEQTWPTEEEMASAPGAAGRDAMEMPPPARPGTTPKLKKVAKGTSAYQAAWIIDEEE
DDGELEEEADEDDDAMRDEAEGQGEEEEEDDEETEFVDTAADETASVSARPFADLSPEQE
QAQLEEYLASRAARRNVENRDDLDFPDEVDTPLHTPARERFARYRGLKSFRTSRWDPYEE
LPREYGRCFMLEDWKGMGRRLEKRAAEEGVEPGTRVIVYLANVPRRLIEQHNPMHPFTLF
GLLKHEHKYSIMHFSIQRNTENSDTVRSKDPLVLQQGFRRFAINPIFSQHTVRNGGRGSN
NVHKFERFLRHGINASIGTAYMPITFGSNSPSLLLRVPTTSADDAHASPDQHVHLIGTGT
LLSSDPTRITAKRVILTGHPFKVHKKTATIRYLFFNRDDVEYFKPVQLRTKGGRIGHIRE
PLGTHGYFKAGFDGPISQLDTVCLTLYKRCFPKWSRVWDGQPLPIVDKDQVRAQAAAKEQ
HIEIE