Protein Info for mRNA_1717 in Rhodosporidium toruloides IFO0880

Name: 10085
Annotation: HMMPfam-Per1-like-PF04080

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 158 to 177 (20 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details amino acids 226 to 244 (19 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 344 to 361 (18 residues), see Phobius details amino acids 381 to 398 (18 residues), see Phobius details PF04080: Per1" amino acids 70 to 402 (333 residues), 275.3 bits, see alignment E=3.3e-86

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>mRNA_1717 HMMPfam-Per1-like-PF04080 (Rhodosporidium toruloides IFO0880)
MHPPTRRRTVAAAVLALVLAAEPTWASVGDRSPAYQRCTAVCRQQLCRDSPSKPASSPPD
SHPAPFSAYSPSLLWPCEATCSYACQQYLTDLALSHSPRPSARETEPGGALEGLPLGHQV
QFHGKWPFHRLDFSSLPLVPFLPLRLVGLFLPRLQEPLSVFFSLANLYAHYLGLVSLRTL
HRRGRMQEGRRLARVYEVYAWTGLNAWIWSVVFHTRDVGWTERADYFAAAWTMVASLWVA
VVRIQGWYASSSKGKTLAPSQRRAALVWTASLVALFLLHCAYLGLRDRFDYTYNMRFNVL
VALSTIFLWALWTLAQSRLPTPSNFSRRQLSSYPSARSRFRAPHYLSPLPPLLLLPALTA
LELLDFPPLGPGGLRLLDAHALWHASTVPVVRMWYAFLVRDVRWIDGQGEGGDPNSVLPR
VPAAVRRTGAEEGEGEGGAKWVLEKVLSEGRRMTGLGTGGGLGIFGGFGAAGGEHGAGGE
AEGKGTGEGQGEGAEVNRDGRRD