Protein Info for mRNA_1724 in Rhodosporidium toruloides IFO0880

Name: 10092
Annotation: K08827 PRPF4B serine/threonine-protein kinase PRP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF00069: Pkinase" amino acids 45 to 362 (318 residues), 165.1 bits, see alignment E=2.2e-52 PF07714: Pkinase_Tyr" amino acids 48 to 263 (216 residues), 81.2 bits, see alignment E=7.8e-27

Best Hits

KEGG orthology group: K08827, serine/threonine-protein kinase PRP4 [EC: 2.7.11.1] (inferred from 69% identity to lbc:LACBIDRAFT_247842)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.11.1

Use Curated BLAST to search for 2.7.11.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>mRNA_1724 K08827 PRPF4B serine/threonine-protein kinase PRP4 (Rhodosporidium toruloides IFO0880)
MQLVNRALPAALPSNAAASLLADNYDDAEGYYRFILGEALDNGRYHVVANLGKGMFSNVV
RARDLGEKGEGKEVAIKIVRSQESMYKAGLKEAQILRRLRDADPEDKKHLVRLLRTFEHR
GHLCLVFESLSMNLREVVKRYGKDVGLNLRAVRAYASQMFLALALMRKCEIMHADLKPDN
ILVNESKSTLKVSDLGSASDVTENEITPYLVSRFYRAPEIILGLPYDYSLDVWSIACTLY
ELYTGKILFPGRTNNHMLLLIMETKGKFNHKLIRKGRFHDQHFDEGMTFQYTEKNDTVTP
RQIPSKPPSDIRSRLMPPGVARRLKEDEARLLGQFVDLLDKMLSLEPARRPTPKELLNHP
FIRG