Protein Info for mRNA_1734 in Rhodosporidium toruloides IFO0880

Name: 10102
Annotation: KOG1721 FOG Zn-finger

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 973 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 96 to 112 (17 residues), see Phobius details amino acids 124 to 138 (15 residues), see Phobius details PF00096: zf-C2H2" amino acids 423 to 448 (26 residues), 21.9 bits, see alignment (E = 9.5e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (973 amino acids)

>mRNA_1734 KOG1721 FOG Zn-finger (Rhodosporidium toruloides IFO0880)
MLYVPLLPLFPCTCTSTHSSGSTRLTSFPPHPSFSLGPPHLSLPPSPHSIRHLYRVATLA
AACQQRCPKPHFSERQLFTVVLGGCISDEVEEEGLTSLLCPLAGSLSALLILQGVRWQDS
RARLALLSGALRVFLQLLDSPAVCSSSNHPSQLPKVRSPPPSSPSLLFRQHNDEHPYSDR
RQGGANATNFDGARPRRNLCKTESERPTLQAALNRRLFHRRLRFIRSSLESKQGTHSDGE
QRPQLARPTASVASTLECNVMFFAEMALASGGRVRAGGRAPGWLRAALVGLHSLVRRGSW
TGRRVGVVQCQCEVLLCIPLACAVVVRSLTPTPTRSSPDSPRLVAGTRGAMQAVAEHSQG
HHLHAQPHPSQRMPSPAHPHPSPATPSSSQQPAPASTTEGDAADGQRESQAGPAAKKQPT
KLFRCNGFGDCQMTFSRSEHLARHVRKHTGERPFQCHCGRTFSRLDNVRQHASTVHADQQ
EKNQETIAHLVSLHNQLSASTVAKQKEAGMIVHDQNVEPRPRKKPAETTAGGEAKPKKSA
GGKKKGSAAQKAKEQADAAAELGQQITGDLDRVASQAPALPNPPPQSVSPFGAPVDSAPR
DSPRDAPQPIPPPGPANYPYAAPPQYPPSQYPSSNYNPSNSYYGAPLHHQQIYGAMGPPP
GNGGMQAGGGYAVMDFYGAGYPPQAGPSTVSSAPQGPPYYSVSPLPPPPPSQHDRARYPS
NVPTSLPYPPVPPPPAQAQAQTDPGALTPNKISLPSISALLPAPSPVQQGQRVEPDPNAQ
QQQQQQQQSYFVPSAPGSRPPSTLGMPPPQQPPAHHQHQHQHHQQQQHLSNGSTSTASSF
ANGSPHHPHLPIPPSSASHYSHLYAPAPYSQPTNPAAPPAYHYAPPPSSASYYAPPPPQG
LRIVCWSGRRLGDSCAGRSGWSGRSGGGAVVRWRAVLERLPLFLCVRHPFSPPFPPLVST
LTASSPATHISLP