Protein Info for mRNA_1740 in Rhodosporidium toruloides IFO0880

Name: 10108
Annotation: K20828 ZNF143_76, STAF zinc finger protein 143/76

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 653 PF00096: zf-C2H2" amino acids 524 to 546 (23 residues), 20 bits, see alignment (E = 1.1e-07) amino acids 552 to 576 (25 residues), 17.7 bits, see alignment (E = 5.9e-07) amino acids 582 to 606 (25 residues), 19.9 bits, see alignment (E = 1.2e-07) amino acids 612 to 636 (25 residues), 21.8 bits, see alignment (E = 2.9e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (653 amino acids)

>mRNA_1740 K20828 ZNF143_76, STAF zinc finger protein 143/76 (Rhodosporidium toruloides IFO0880)
MLLLDSAQPSSSSTSISGDDCLQCASPPLVDACCAPSAIHAGCTDPTCLPPPTPVPDDCP
TCVNGLGLITTNDEERHAAASDGKGKDVVREQAKDGDEQMADLDSLLHGLDEQTIQDILN
CCCCDTVLHDQPSTFDPTTHLQHQQLPQHIHCADSHQQSTPPHHAHPHRHPVPATFDPTA
ALDQLLRIQPPTPASLPATSSTPNAPAPFATSSAPHNCGWRDCILSFASHDELTMHVLGT
HLVNPATAVTPSAGASSLARVALLQLVQQAQATGQVAPAVPLAAALLSLLSSALPAATTR
ALPHPRTTALSALPHRHPHTHPHSHAHAHSHHHPRPHAQHRHPYGAAHAHAVAAKREKQR
QSQLDEAPRAMTGSVDVSPPPSIAVAASREASVSLAPISPPSDVDAAPATSTSPPLASTS
ASSPPLHAHACHWRHCTLTFPTTSLLMEHLSTAHVGAGKARYTCEWDGCERSTCVAAFEE
GEDAESLGEDEWDRRREEREDKGVFRQRQKVMRHLQMHTGDRPFACEVCGKTFSESLTLA
QHMRVHTQERPYICDHPGCGKSFALASALTIHKRTHSGDRPFVCTHPGCTAAFSESSNLS
KHIRTHGSERRYACAEPGCGKSFARSDQLKRHAKVHERRKRGAKGEVEESVVD