Protein Info for mRNA_1746 in Rhodosporidium toruloides IFO0880

Name: 10114
Annotation: KOG2897 DNA-binding protein YL1 and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 642 PF05764: YL1" amino acids 49 to 290 (242 residues), 155.4 bits, see alignment E=2.9e-49 PF08265: YL1_C" amino acids 422 to 449 (28 residues), 42.1 bits, see alignment (E = 5.7e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (642 amino acids)

>mRNA_1746 KOG2897 DNA-binding protein YL1 and related proteins (Rhodosporidium toruloides IFO0880)
MARRARARSSPEPSEEPEAASSAADASSADEGSSSDSEQIEVEPNLATRSRRSNAGARMQ
ALIEDEASAKVETEEMFREEENDEEFEQKEEKDEFDSDFGSTDEDAGDDEDDEEAGEKRL
QREAKEAKKAERTKKKKGFQAPVHPFARQTKAARKKAAAAAVASTSATTLDGEGEEAGEE
PPKKKKKVAIDPALYAPQRESTRRTAVESRRQVQERLKETEQRKAVAPKQTKKATRTLTQ
ADLIAEALETEEKNRAALLAFYAAEEDRREQERIAGMRYEIIGPKLTFLSRVQGRVDKGK
GKEEKMEKGRKRLIEVIGESGQKGWKAGGAETGGAVAGPSGSTRSNASAKPSTSASLNGI
LNPIDADSVTSQPPESQEYCRNWLIFDQFEGSRGEELEALFGDHVDWTKPPPMPKNGTKH
TLCPITGLVARYRDPRTLTPYGTLSAFRTLNAIVDHQAFIWSDSLSAYTGTTGFGLMRDV
EKSWSKRPLPPGSRLMYAVATPPPVNPAMVKGKARATGQGYPQQQQRAQVENPYKIEYAH
AGGSGRGQRGRSSLPTDPAAQYPVPAQTSLPPPPAGAQLPPLPPAPVAAQTPPAFPAQPP
FPSPDGQAQYAPHPMVGASQAPQARSIQLGSGKSAFGPPQGQ