Protein Info for mRNA_1752 in Rhodosporidium toruloides IFO0880

Name: 10120
Annotation: K15363 FAN1, MTMR15 fanconi-associated nuclease 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 926 transmembrane" amino acids 330 to 341 (12 residues), see Phobius details PF08774: VRR_NUC" amino acids 746 to 844 (99 residues), 71.3 bits, see alignment E=3.5e-24

Best Hits

Predicted SEED Role

"Hypothetical protein, restriction endonuclease-like VRR-NUC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (926 amino acids)

>mRNA_1752 K15363 FAN1, MTMR15 fanconi-associated nuclease 1 (Rhodosporidium toruloides IFO0880)
MDAPGPPPTPSAGDAGESPPPLADVASLPAEQRVSFYVQAVDEMVDAVLENEAFLFSDDE
VAALRRFREMHYQSRYLFSRLLLRKPVWIRHSSLLNSASYTNDISDLPAACVELCQTVAG
PSPKPKEEESKPVVEVVKEEVEVKKEDNGVIDLTLSDTDDEKPAAPFAPSPTPTRSTKAK
GKGKAVATPAPAVLPRTLVPPDSPDDLPDLSHFALDVTALTNEKPETILGLLSMEELVAL
GKKMKVSVKGGATRGEWTKALLRTSSQSTLSFFALAQPQQPPSPSSPTGSAAMERKTSLG
SLGVGYDSKGNKLTQSSVVARHALKIIGPVIRLSPTFLLLFSRLSLVYHRTSYLSSNNPY
RASPLTASLLARFGKRHYPSYTVSRSFALFPSRHVLREFEAAIEIERELEECLEGVWGPG
VPKRSEKETSEERLERYRRGVAVWESIEAEWRRLCEEAECEMKSEEDDEEKRRLYYRRRF
HPGWPLSRAAYKAAACYAKLGDHDSEVRILRYLLAQTSFRRGKRGDWYDRLALVLMNHPL
GAEKALASSSEVKEELKGKKKERKEKFVRERKEEAMKICEAGLSDPYTHLIYKSSLQRRI
SRIESALSVPPEDRRTFPVLLAKSAQRLMQGERIDTPTIGKKSIWQRSDGEECSVEELCL
EQYVREGWKGFHSENGVLTMIFALTFWDILFATVDGVFETPFQTAPLDLATDAFAIVRRP
AITDRLASIAAGEAVKLLSETDDRERPLATFAVGTNWDKYSKEDLVEIVECIGGPALAAI
LTVFVEEYGHRTGGIPDLCLWNPSTSRALFAEIKGPGDQLSETQKVWIDVLLGAGVGVEV
VRVVESKDMKEESAEDPSENEEDGEDEESQKTKRKKAKKRRSSESNGTGRARSRSKSAAK
GSRAKRAKKEETVEAEDVVVLDDTDD