Protein Info for mRNA_1771 in Rhodosporidium toruloides IFO0880

Name: 10139
Annotation: K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1379 PF08801: Nucleoporin_N" amino acids 99 to 574 (476 residues), 216.3 bits, see alignment E=7.2e-68 PF03177: Nucleoporin_C" amino acids 821 to 1256 (436 residues), 140.2 bits, see alignment E=1.1e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1379 amino acids)

>mRNA_1771 K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155 (Rhodosporidium toruloides IFO0880)
MSLTRSQSTHDAPPTNSLSHSSSNQHASSTSNQVTQQQQGSQQGQGKSEQSEDPVLGPLE
KAGKVLEERLARDERWVGVGDSLIGASSSDYVLPPNPAWAPFTKTRTVLLPDRLFEEHDL
TQSRCTMGLLPEIERAWVTVDHRLLLWDWADGSSFSTFEELTDVIVGVALVRPRPGVFVD
SISHLLVLATPSQVNLVGLGYAAAEPGAKKDVTFYLTGLSVPTDGISFTTIRGTSSGRIF
LSSSPDPLTPGGIGGDGCLYELAYQAQEGWFVKRCTLHNLTSGGIAKSVVPSFLRSFTAI
PQNDWIVSFEIDNERGLLYTLLRNSTIEMYQLPSSAPGKAFDGPPNKVAKSGDLHRTANM
LLPNNPMLKSFRIVEFEVISVKEGGNAKIGLVAVTTTGARLYFTHQRRGYYYGVSGSSAA
LELCHVRPPPAPSSPQPPAQNGMCGQVVPANQQQQQNGGNSIPFNSIIQAKYASGGLFLA
ANNLTPDLDVLLVTAPDVSSQSLSSAATATGTVSQQTRPFTEVAGTIEIPGRTWDMAEIT
RVSSSSATGATALNELATQPTQARREWVVLTNMGANVVSRQRPVDTLVDVLEGMGMNGNA
AGQGEIGVFFESYGRDQSCAMLLPIAASNSQLVLNDSATTSSPGSAVNAGARNTSAAVAE
QAKALFFEGGGRPVSIDRGGYGGAPQSTASDSKIIFSGRHEGLAFYFARLVRPIWKQKIT
RVGYSPAQQIANVPESVLSAVQRDLLALRTFVEQEQHLFTPLPDSSRAGHNAAAYAAEQA
SLSALRLLLTQSVEAISFILLLIDYKLQDIVATCPSDLQQQLAEISYAELLTTKKGRDVA
RGLVSAVINQQIGRHLSVDAISETLQQRCGSFCSADDVLLYKAIESMRRAKDTYDSTERT
ECLRESLRLFTKAASHLSLDRLQEICKEYTSMRYAVGVIDLSLACARTWDSSERAITYWL
DECPSNDAREGAYKTRQACHKLVFASLEEMDRLLDDASKPNKPAGSMSYEEADSLRTNAY
NKALSVKDEFFHFELYDWYLSRGLTNQLLETRTPYLEGFLAREPTTLEKSDLLWQYYVRT
SRYARAASVLASLAETPAFPLSLQKRVEYLSLAVGNAKSQIPSSSRGDAVQFLTDVEEKL
EVAQVQIEIFRAIEESKMPQDEKQQWLDKVEDRLFTITELYSEFAEPLELLEVILLIFHV
SDHRDPFLVTATWEAILARAQEEQPDHPIDAVAAKVTQLGYRFHTSDVSFPLPDLIALLE
KFSYERQGDARPGWVPLAIHDAGVPFEAIFAVYDELFIAKIPPWHTSAGLTFLASDIVEL
LSSWLAEASSAPTTVSRAFPATDVESAIGRYLMGLQSASNAGAVVTRLQEMSRAIRRRW