Protein Info for mRNA_1796 in Rhodosporidium toruloides IFO0880

Name: 10164
Annotation: K10878 SPO11 meiotic recombination protein SPO11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 PF04406: TP6A_N" amino acids 422 to 483 (62 residues), 72.5 bits, see alignment 1.2e-24

Best Hits

Predicted SEED Role

"Meiosis-specific DNA cleavage protein SPO11"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (737 amino acids)

>mRNA_1796 K10878 SPO11 meiotic recombination protein SPO11 (Rhodosporidium toruloides IFO0880)
MAMLFDWPADEVRHGSPAVADELDFSPTVATCRSLYDVHGPSRTSTAFSVLTEGGNELEE
SVDEATETLPLEWDEEDEEGTSSDGDEGTGGTVWPGISDTGEPVGGLGDTLALEDELSSL
EVDPLDRVRSSPSFTLDADGSAGVNDGPHPVSQQSAPSHIEDPAGLSSVIETLKRDFDEA
FSTPTFEHEHSLSPPAKRFRLPTPTPTPADTRAPSPARFELPPPIRPRSPTQAEMDAFCG
FVNPVAAPSPVEELRRLATVPSLAGTPQEVAQASTSPEAAAGQVAIAPPEPMLEPERLED
TIDSSAEAQKPPVVDEAYYQLTPIPTVSRAGLPLSLEDRRLAIISSLEQLALSVFSQIVD
NLAPPAPPSADSFQAATRPPWKQIRVVLAQRRSSKNSGSAARQTIRFPRKYGQGDQVRLG
GKELACLLRLIELVLEGLRDEKVSTKRDLYYRDVALFGKQHIVDSLIEDLAATLDVRRSE
LNVVAAAKGLVAGAIKLVLKDGTVQNGREQSILIPTAQTLDSVEADAAEWVLVIEKEAGF
QSLASSPLLDDPDLGNGIILTGKGYPDIATRDLLKLLSDSYPSLPLFALVDSDPHGLDIL
STYRFGSAALSHDSANLAIPRLEWLGVKGTQWDSLGVDRDELLPLSLHDRRKALAMLKRE
GLPDEWGRELQYMLHLGRKAEIQILASSSSPQHLDTDTQICPPTSDSTPATPSRLVSYIK
TKLRLAFARKTEGTDHA