Protein Info for mRNA_1811 in Rhodosporidium toruloides IFO0880

Name: 10179
Annotation: HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 989 PF06657: Cep57_MT_bd" amino acids 892 to 966 (75 residues), 53.7 bits, see alignment 1.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (989 amino acids)

>mRNA_1811 HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657 (Rhodosporidium toruloides IFO0880)
MASTTPRPHNRHNSHLHSLVDDTPTRPPSGASFNTTTLTSLKPQRSAAHAHQLKMHSLGG
YAGGQRAGLAQLDTNRAGGDRPNSRGSGFSLKASDLDGLGAGAGHVGIIEADNTELARRR
AEASFQREMEELRNARLSSTSGSSVDGEEQRNRQFDDESASTRSDASRTSASSFGSLKIG
LTGTRTTAQHQSLAAALDDNNAETTDDNLTYMTIPRTDESPAASPARPAAPATTAAAPAS
ARSSPYSRAPAASTNLFASPRPFVSSAAATAGTTPLTSSPRPRPSPANNNENVPPARSAS
YPSIPPPRTSPFHSFSPAAPSPASAPVRSATAIPHRPSPLGRNSPILAQNTTTTTGISSP
SFVVRSPKNVSAQGRSPIQPVRTTRMGGVVIEDYITSSSEDERDAANKSVRSVRTALPDK
TGLTEFLRSPEKVRSGVTPARRRVPAQGQAGLDQRGESGSSSEGRISTEANLLTNALSSL
TSKLAHLESENASSAARVAELEARLRAAQHSQSQSQVRDRVDEDERRKVRVEVERLLGEE
RERREELEQVVSSLRAQNAHLDATLASHRTSLDALRRQASTTAAAAQPTSSPKPRETDYA
LRSEVQDLKHALSALGFEVDGVRAVVEELLRDKEERDAGRKWEAEEEERREQLARRQEKE
DERTPKPARIRKDGVGVGVGDVPETPASEESWISREEVEALRRDVEREEARRTMKSKNKP
RHSDPILAPAEPSYDSTYVPSYSEEASEASFVSATSATTLSATSSFDSADEPDFARAERI
FESVPSHEHRRKTRPSTRTRKDRVVLLDEPSANLCANCHGRKQGLKGASPSSRRRSRGDG
ADADEEDLAPVDEERERRRRERKERERVKVEEREKKARREAAEKERRAREKKAREREEHR
RTLEAVLDRLEEDFAVQKKIYFELTAEYQAMTSRTDTNKRRMLANHLKKSIDVLEEKARE
VKRYADALEDMYETMHVQTCPQRKHHAVV