Protein Info for mRNA_1813 in Rhodosporidium toruloides IFO0880

Name: 10181
Annotation: K04352 RASA1, RASGAP Ras GTPase-activating protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1694 transmembrane" amino acids 1072 to 1086 (15 residues), see Phobius details PF00168: C2" amino acids 771 to 853 (83 residues), 37.4 bits, see alignment 2.7e-13 PF00616: RasGAP" amino acids 950 to 1118 (169 residues), 105.9 bits, see alignment E=2.5e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1694 amino acids)

>mRNA_1813 K04352 RASA1, RASGAP Ras GTPase-activating protein 1 (Rhodosporidium toruloides IFO0880)
MAPHSSRAQPTKDELDMLEAMMDKMDGSRPSSSSGGFPPRTTSRASSHSHLSHQSSNRSL
HSLNSTHAAPGSSNDPRNVRSPSALSDVYSSRHDFDDDATPSVSQGEWGRTRTVSAKTYD
DNSSIDRADSPDVYRSSSAHYPSYSRSMPASPRSRSRPTPSPLPDTARSGSPLRLLPRSP
VNNRTPLEDLTFFREVGALADERPWGSSSSQADADADSLSIRSGHSSVLSGGSGALRASN
LRAARLREDIEKEAQRIKERASMEEMRRNAEAASAVAAGHRAITPDPPRTSPPVDPPAPA
PAPTLGSRQSSDGRRDVQSGIPLFPGAPSPAPSPLIPQEDDTRSIRSVGSSVATGLWSSS
HGREGTSHSGSASFSGSGMSGSASARTEYGLEGGSGVRDRERRMRQKESREWSQTCWVWH
REVKASGAGGLSGSGSVGGFAAMGGKFSKAPLIRDVPAALKRKSNKRESAHHLLSPAEAL
LFDVEDSKSGGSKSSSSKEKEKDKSKEKGKDRMPAGPAAASRDGRWRRATGVLRDDGFFR
VFADSDKTVVHSVHLPSLNRTDVHLVDHSLFGRPNCISIARPAVSPSTPRRASFLPSSSS
TALSRSDDSVYLCFPSIIATQVWLVMAHCFAQPEFYLSSGAATPRPFRSSTTRRGGPSGF
PASSDSGSDSEPDGKADELESSCRIFRSLQVSVNEGRALGELATEIVRPGPKASWERPSQ
DEPDLTTSSFDSSSLGPEASPAKSVSSMAMPRLHSRASHDSRGSGGDGSSSSSSEAFCEI
EMGGEVVAQTAVRKGTSPFWNETFVFSDLPPLVSPIVIRVLQSSSKHPTKPLLIGTATVR
VPDLPRQQIVEDWWAVKPANPTKSSDAVGELSLSLKINEEVVLPSRDYQEILNLLTDDPE
ADLASEIAHEFPADLEEVTRILLRVYSAKSLLLPRVLRLADLEIDSNARNNRSAAILFRG
NTILTKTIELYLRLIGAEYLDASIGNVIRRICADKVEIEIDPMKVKPGTKDKDLLANTHA
LHEWTLTLWNSIYDAREKCPHDLRQIFNHIQTVVVEKYGQSDDQKNTRWTCVSAFIFLRF
FVPAVLNPKLFFIVSNPPDPKAQRTLTLVAKTLQGLANFSSFGQKEPWMLPMNAFVRENH
AALVDFLEHVSTPGSSAVLRQEWTSPNAPAYLAPYRLRSSLSPLAQEGVPLLPHLVDLPR
ELGALAARVARLAAEKGPIVEESIAPYNDRCETPSIASSRGGRSRQFVDFADACLDVYSE
SRRRGGGLVSAAQYPDVRMKTPDPKMRAKRAMTGRPPTASSSVSTAGLRRSLGLGGTDRN
ARAESTGSEDLYIRKPMSQAVEPDVEAVGADLARTHVRDVSVESSDSVMSRRNHRAFTIN
GAGAGGISGLSQGGAPKSFSTEDLSLLASLRSSSSDDIREGAASPTPLPTSVTLTSLSGY
ANQPSRPSFEGSQIYASRSIPAASILAPSEYAFPPNRSPKPSATPSAALSTSASTRTSST
SRSSQLASPVAAPTSRIRITQETTTTTSYVPDATTALSLVNSDSPVPVDDDFSLSPTSHE
DGTPFESSFSGFSAPLMRAQTSQTSAHSVLTVLSGRSLTASSSSVSISAEVSAGAVGSSG
GGAGLSGRRASTAGFSSFGLGGGGSRRGGPGDRGSGSISGVVRDDESEGGSSRASSGKGG
LLSRAMGRKGSRAS