Protein Info for mRNA_1835 in Rhodosporidium toruloides IFO0880

Name: 10203
Annotation: K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 832 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 45 to 70 (26 residues), see Phobius details amino acids 83 to 98 (16 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 214 to 243 (30 residues), see Phobius details PF12678: zf-rbx1" amino acids 332 to 372 (41 residues), 35.9 bits, see alignment 1.9e-12 PF13445: zf-RING_UBOX" amino acids 339 to 369 (31 residues), 25.3 bits, see alignment (E = 3.1e-09) PF13639: zf-RING_2" amino acids 342 to 372 (31 residues), 39.2 bits, see alignment (E = 1.8e-13) PF00097: zf-C3HC4" amino acids 345 to 371 (27 residues), 25.4 bits, see alignment (E = 2.6e-09) PF13923: zf-C3HC4_2" amino acids 345 to 371 (27 residues), 29.3 bits, see alignment (E = 1.6e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (832 amino acids)

>mRNA_1835 K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin (Rhodosporidium toruloides IFO0880)
MVRGGRLALYGAVSTVLAVWTVLNAFRQRSNFYAAAVYLSKSNACMMILWNQGIFQTVMF
GKLLQAVFLGELRLIEVERLQERGWFAVTETLLALTIFKDDFESTFVVLFVGLLFLKVFH
WLASDRIEMMEQAAQVSRLAHARMIGLLSLLWLADIACLFYAVELIMIDGPTVMIMFASE
YMILLATVWTTTMKYALHCIDMRRDAPWEAKSIYIFYIELAADFFKLCTYLTFFGLILTF
YGLPLNILRDVYITLRSFLLKLRDLRRYRQATRNMDELYPNATREEMDAMTDKTCIICRE
DMEFRPAEGEAAGVEGAANDPQAGTDGRAQAPQAEQRVGLNDTPKKLPCGHVFHFHCLRS
WLERQQSCPTCRRPVLPQEQPRQQPQQQQPFPGAQPAGLAPPGAPNARPGAPGAPPPAQD
AVRQAQINLARNLGREAFGILLPGIPFPPEAEGLTARLPPPPPTVPPAAQAGATQAAPPP
AGSTSPPPASDSATATAGPTSVSATPPVDATTAGDNPLARFNLPSLPLPETGEGGLYHAP
PTMAYPTPGSSSFADLAYGSYPQFVGAPLLPPPPAGSAQARAVPPNLLDRIDLIRRRWQA
LGAAGGEAVGAQANSDANGAVADENDKPKVDKGKGKAVATEPAVESEAESAKADEELTPR
EAALRAAERRAGKQPASTSARPLPTSDPSDRTVIRVNDEPQSELSSSTARPPAPPGPVAL
PRLIPLFDPSNPPVPFFPSATLPSLHDVLAPSSGSKTKSEQLSETDELVRRGLEERLRLL
VGFQDRIEHLVGDMRTALGMDLTAGGVRSSGSGNDVGGGGVPAEGGAFNDGA