Protein Info for mRNA_1841 in Rhodosporidium toruloides IFO0880

Name: 10209
Annotation: KOG4476 Gluconate transport-inducing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 PF09729: Gti1_Pac2" amino acids 12 to 85 (74 residues), 89.6 bits, see alignment E=1.4e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>mRNA_1841 KOG4476 Gluconate transport-inducing protein (Rhodosporidium toruloides IFO0880)
MEAELPRSGHSYFGIVSSAQEAHAILELLPRVTRRLTDDERLRFVRPGAVFVWEEEEAGI
RRWTDHIKWSPSRVSGAFLTYTEIPARGEETLVKQSFSSVDANGTKMHLIAYTSKSACAN
GLLPLAARDPLIQHMLALRTNSGRDPREKPAVPPPLPVAAPSAPQTPVVDGFPSHMPPFA
PHPAAAQGYLHRSQSSLVDIGSATRPAGGAATEKTRPSTSTSEPRRSSSYDPWAGRPPSP
SSRSLNQPTSTNNRRHPSPLLQPAPFDPSHPPQTSPRNWSFAYDPVRDGPPSTTSSVTQS
RFPSLYSSPAPSPASVFTAPATTTASPFDPFPRHLPPLDGLEPAGLPASAGDSPPRFLSH
GTFLDDFDDERRDQGRLSPRQNMRAAEDERVLRLFSSAP