Protein Info for mRNA_1895 in Rhodosporidium toruloides IFO0880

Name: 10263
Annotation: K09247 CYP1, HAP1 heme activator protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 870 transmembrane" amino acids 397 to 412 (16 residues), see Phobius details amino acids 651 to 669 (19 residues), see Phobius details PF00172: Zn_clus" amino acids 83 to 113 (31 residues), 24 bits, see alignment (E = 3.5e-09) PF04082: Fungal_trans" amino acids 297 to 438 (142 residues), 31 bits, see alignment E=1.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (870 amino acids)

>mRNA_1895 K09247 CYP1, HAP1 heme activator protein 1 (Rhodosporidium toruloides IFO0880)
MATNGLQDSYSADAAAGPSNARGARAQDDSAHGLVGRGKRVRSQTVDDEDELSDDDSRNA
SPALGPGELPVKPKRKRNRAALSCALCKKRKIKCDRKLPCEACIKRNEQHLCRWEQPKVE
PPPQPFALAVDHEQLRRRVAVLETVLARLAPDLAGELADVAAAPVTLPLRPKASTNDGED
QQDSDAENVEDAALVLEELALHHKLTRVAPKTSKTARSASPRLASSSRSLPVLPPVLPGS
GAMHLSPSSTVSNADLASRALESLIVPAIDSRRKLVLDDIYANLPQRKSVSDWMLRNYFE
RVDWAWHLHHKPTFLAEYDAFCLLRSEGRQAEIDPLWLACFAMTLCLSVNSLESPIESPL
CSITAQDLDTLPWKYFECAQSALECGDWTGKPRFRTLQAIVLFAPFFLFAGNRAAAERHQ
TYIGAALRMAQSMGLHQLGSDPSAMPLLSEEDEINSGLPPGVNTLKREMALRMLTTLLFL
DYTSLRIKTSLPPHLVTSALPGNYNDSDLSPDEVVPPRPAEEATDISLDLVKFRTALEQR
KFKEMMDGDLPLTYEAILAIDGNYRAILDSLPVQLREDYIPPLGEPLTNLWRRNMAIQSV
HSRILRVHRPFMAKGWTVEKYRRSTTTAISAARSILACQISLNSAPLLKSGFQLLNVQIA
IIVLFMSLWQDTTQTPREADDDLTAITATFPWFEKHVDSRVAEVRMIAKSSLSAFGLLKE
AYEDKESRRRAAGELWDQSQEEPYGRLLQRVGAIVSATTGSSTDTLFVSPAATTSQPRAG
GAMSLDSLLAPQQAHHSLGAVESWAGFANGGGANGGPVFASSAALGLSDAQPDLAVDFDL
AMLEGPEFADPNFSWSTWTALGQFASLGTF