Protein Info for mRNA_1912 in Rhodosporidium toruloides IFO0880

Name: 10280
Annotation: K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 PF11786: Aft1_HRA" amino acids 224 to 292 (69 residues), 55.3 bits, see alignment E=1.1e-18 PF00170: bZIP_1" amino acids 680 to 738 (59 residues), 45.6 bits, see alignment 9.4e-16 PF07716: bZIP_2" amino acids 682 to 732 (51 residues), 26.7 bits, see alignment 7.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (803 amino acids)

>mRNA_1912 K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2 (Rhodosporidium toruloides IFO0880)
METPSAFMRESGALDLSESREGWRSPRAEGWNDDRADGSLERAACARLARDGYELLAQDF
LELGEAGGTGEAAANQRRSLTRRVGAHKGRQADGIARSKAGLGERIRITGEAGHSGRTPP
LTKPPLPLASTHLAAGRHRASSDPLSRGGAFLDGAGLLQQELNPFEQSFGPQASTSKPTD
GTLTAGGRRARSTSPSALLPRATPGGLQRLPPLSLMQTPGGELSAFNWGVDSLRTGPLSP
ALLNGPTGTSALFESSLRTGLTPFVASGAPNGHAGGGVSFPPPSPATAALFAMMTNNTPG
TSDAAALAGGGPRPHEGLNEANSFDASFAQANSTQHSKLRNSLRASDSPVDMNGGVTQPS
STAGMTTRSSSNVSVAPPPPPPGVAYPPQGPPGSHVYYPPGPHAHTGPPGAPPPGYAFPP
HAPPPQPHPHAHSQGPPPPPGAPPHPHFTGPPGQLGFTAPPPPTNPLDLLTQASFHNDDA
VAAAAALSGLATPGGGFPAAAVLAAAQQQGAAGGIMPGSTVTGGPGAVGTGPANGGPAIK
DSSPAPSAGSSAGGGTGRAKRGAAAAGAAVSSVPAKRARKPTAAAAAAAEEMSLGLDEEE
VATTATKKAPAKRGGRKAAAAVAAAKKEDPDTDGMSVSANGSVPPEAGGSGEYQMEGMEM
PSGPSKGGRGRKKDTGETEEEKRRNFLERNRQAALKCRQRKKAWLQSLQTKVELLTTDND
ALQTTVNNLKEEVNSLRAILAAHASCPVALGNVPPAPLPSGMSPIDPRRAAMPGMPPGSA
PPPHAGHPPASIPPGYAPRAVYQ