Protein Info for mRNA_1925 in Rhodosporidium toruloides IFO0880

Name: 10293
Annotation: K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 transmembrane" amino acids 105 to 124 (20 residues), see Phobius details PF00378: ECH_1" amino acids 11 to 228 (218 residues), 106 bits, see alignment E=2.1e-34 PF16113: ECH_2" amino acids 16 to 216 (201 residues), 63.6 bits, see alignment E=2.4e-21

Best Hits

KEGG orthology group: None (inferred from 44% identity to fgr:FG05551.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>mRNA_1925 K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase (Rhodosporidium toruloides IFO0880)
MAPADAILVEIQAPFAIITLNQPQKKNALDSTLYKRLSSILQDIDRKPEVFVTVLTGKGD
FFSAGADVKATREAFSGEDARVSALERLSGGNLDLTRSFYRHSKILVAGLNGPAIGLSAA
LLGYCDFIYAVENAYFLTPFSAISLVCEGGASQSLIQRMGLAKANEALLFGKKLSAQELH
QNGFFNGLFPPQPDTSFRKALLASLEQQLAGLELDAIVKSKQLIRAALPDPEQANAREVF
AGAERFATGKPQARFAQLASKQMRHKI