Protein Info for mRNA_1929 in Rhodosporidium toruloides IFO0880

Name: 10297
Annotation: K07880 RAB4B Ras-related protein Rab-4B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 TIGR00231: small GTP-binding protein domain" amino acids 23 to 195 (173 residues), 74.4 bits, see alignment E=4.4e-25 PF00025: Arf" amino acids 24 to 166 (143 residues), 34.8 bits, see alignment E=1.7e-12 PF00071: Ras" amino acids 25 to 205 (181 residues), 155.2 bits, see alignment E=1.8e-49 PF08477: Roc" amino acids 25 to 160 (136 residues), 91.7 bits, see alignment E=6e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>mRNA_1929 K07880 RAB4B Ras-related protein Rab-4B (Rhodosporidium toruloides IFO0880)
MVGTDSDSSSLPATELPELYDYLLKLILIGDSGVGKSCLLYHFLNDRIRDPSPHTIGVEF
ASTLMRLPSSIPSSSAISTSASPSRPAASKTLKVQCWDSAGQERFRSVTRNYYRGACGAV
VVFDITSRRSFESLTSWLSDARALASPDLEVVIVGNKLDQEDDRQVPYLEASRWAQEHGA
LYVETSSKTGENVEQPFILLARAILLAVESGKLDPDKTGSGVSYGERALRRVSSWNGSLG
GGGKGGLLGGKCC