Protein Info for mRNA_1965 in Rhodosporidium toruloides IFO0880

Name: 10333
Annotation: K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1270 PF00076: RRM_1" amino acids 172 to 220 (49 residues), 25.9 bits, see alignment (E = 1.5e-09) PF11767: SET_assoc" amino acids 597 to 640 (44 residues), 30.1 bits, see alignment (E = 6e-11) PF11764: N-SET" amino acids 1040 to 1124 (85 residues), 32.4 bits, see alignment 2e-11 PF00856: SET" amino acids 1141 to 1246 (106 residues), 70.5 bits, see alignment E=4.7e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1270 amino acids)

>mRNA_1965 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 (Rhodosporidium toruloides IFO0880)
MGTQQTRPRDAPSPSPRKISIALPPNLAFSSSRPPSRPSSRPPLGNSTPRAPSTSASASS
SRIQHRSQTEPEKPPPFFYKPLNTKDYRVLYDPALDPNPIKKGKEVVKRVDGDGLADDAG
ARDPRRTTDPEQLKKLEARRRKGPLMRKLGVITYSWDKNSTGPPPPAPPSAILVTGFPST
TTADAIHAHFRSFGRIEQQDVKYDTQTGGSLGICWIKFVDDVPRDPEPDKPTREKYERKR
LAGQAQDGGAVAKDAVAKANGAKIGMAMLMSEQGVKVVLDADGKLCRAAVKAETERLHPP
RPKPAPKPPSRFKQPTPPSSLPPPPPSLPPPPPPPTSSHAPALASSSGPRWATPSGPRAH
GHRDPPPPTDSRANPISAFPDAVSAAKHIAMPSVPLPPIKPAVRSWSPTRDRPRQPAPLP
PRPSSTFARISPQRNGRLPAPQPHSAPDRPGAPGRGPPRKSESMASAVAQAVEAAKRRLQ
NMRANGQPERRTKGREEGEADMDMSSEDEGARSGSSSEEEEDAKDAVFFHGGRDSDRRPA
PLKWGAAPVGAIAWQVSKKVLFEKLSANGKPYLSIDKSAYQRHRLAQGGRMAVPNGQDLE
RHFQDFRIDKTFADADGWYVTFKDSDAAKRAFDKLNGRRYAGAPLDLVLCESPAPPLVLP
PKPATEEKAERPRGRLPEPGSHLAAIVEKLSRAVKPKKTSGWTDAELIEEAKDLVIADLL
EVFQNDVTARLVRGKIQEHLTRWERDGMPTSTSATPSTSTAPAVKVEPSESAADVLSLPS
SAPKSLSTLSFAKRRSATATTDERPPRRRPSAAASRFSSEAPSESLHDHSEGEAESRKKG
LAKTKKPLPRVVSASEESSDEEDARAKERERERERERARRKKQEARKKQKATPKKVKVHL
DYTSSEDEAATPARRLSLDAVKQETPAVTEIFEPSPTPDTVTLKPAKKAIKVEVDDAMDV
DDESSRAASPAPVAKLKKAAKKAERPARVPIAVPATTDPFEAGLAADEEDLFFLKLAIER
LQLGKELHPTPPPSDDEAEAPPKHSSGSARTEGFYPVTIEEKMANRPASNKAKAADAAGP
AGSAAASSVAVSRLARANTRGLVRGMELHKKVTATDTDVLKFNQLKTRKKQLTFSRSGIE
GYGLFALEHIPAGDMVIEYVGELIRQTVADRREKAYERQGIGSSYLFRVDEDLVVDATKK
GNLGRLINHCCVPNCTARIITINGVKKIVIYAKTNIEPGEEVTYDYHFPIEEDNKIPCLC
GAAGCRGYLN