Protein Info for mRNA_1966 in Rhodosporidium toruloides IFO0880

Name: 10334
Annotation: K09522 DNAJC2 DnaJ homolog subfamily C member 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 PF00226: DnaJ" amino acids 106 to 174 (69 residues), 63.4 bits, see alignment E=1.8e-21 PF16717: RAC_head" amino acids 360 to 449 (90 residues), 62.3 bits, see alignment E=7.3e-21

Best Hits

KEGG orthology group: K09522, DnaJ homolog subfamily C member 2 (inferred from 54% identity to cnb:CNBI0450)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (458 amino acids)

>mRNA_1966 K09522 DNAJC2 DnaJ homolog subfamily C member 2 (Rhodosporidium toruloides IFO0880)
MASSTVVTLQVSLPPLTKEYKAPSFGSISAPSSSASVYPSGPAFEAHARRILNQRSFAED
DHLEKERLSANGNGVVEEDDADAELGNEQEDRDLLELDPKQWKEQDHYAVLGLQHLRYKA
TEEQIKKAHRRKVLRHHPDKKANAGGSANDDSFFKCIAKAMDILSNPEKRRQFDSVDEAI
SDDFPDAKQTTADNFFELWAPVFEREGRFSKRQPVPALGGPDAPKQEVEAFYDFFYNIDS
WRSFEYLDKDAPEGADSRDEKRHQEKKNKAERDRRKKEDNTRRRTLVDTGLSLDPRIKAF
RAAEKAAREAKRRGGAPGSAPVDPKVKAEEERKRKEEEEKAKAEQAAKEASDKADREAAK
KAKAAAAKNVKKDKKAITNLLTTHNYFTLPGTAPAPATVEACFAELDAMFSVMEPEDVAA
FKAVLDKASNQDEVKAAFVEQAKKVADKLAPGSFKEFA