Protein Info for mRNA_1978 in Rhodosporidium toruloides IFO0880

Name: 10346
Annotation: K14409 SMG7, EST1C protein SMG7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 PF10374: EST1" amino acids 115 to 263 (149 residues), 69.9 bits, see alignment E=3.7e-23 PF10373: EST1_DNA_bind" amino acids 300 to 560 (261 residues), 104 bits, see alignment E=1.1e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>mRNA_1978 K14409 SMG7, EST1C protein SMG7 (Rhodosporidium toruloides IFO0880)
MALPTASTSTRAPAGPSGSGLSGQIREAKGLALELKSLLKRKEPWDRDLEFQRESTRKAY
LRIIFSPSPSPTSTSPTLARASRTSSAADLSLKPRSSSSAALTPAALYTSRILDTLNLLW
LDTSHSLIQSYRARLADLDKQLALEKEKSKRGRPSAQQGGGGAIQPVGPVARRKLVHSFR
QFLAKETEFWKTLCGRFAARLEDEERVELRRAVGIVASFIDDTADANAGDAEAQKSRRSA
VLPLAHKALICLGDLERYNELYNESSSVPTAAATSGRGGKRGGKAGVGSGERKIKTYAKA
AECYNQARLLLPDNGNPSNQLAVLSQYASDPLASIYHYYRAICVRSMPFSTARANLQITF
KKAVARWVENGPGEGDEAERFKTLFVALQGVFFTKERLPDIQRLTTETTDLFRIVIAERL
FTSDVVLKIVVTSLAALWDARMSRTGPTALSRNGTKNGSKALLDPAAGDEDGKDASTTSP
KVNLEPHILVHLFSLFTALLSVSTAETLELVSANQTSPDAPSPHASQNISAVLRRALPSI
RILNRWLVAQVEYVGRVEARVEASERRRARTSTSTTGAGGIEEAQNPSLDSSGANSTPSG
TNPLQRVSLAEFRTALDDFWTAYADFSNTLKLAFPPSELPPLDDGAWLEEDVELLGFAAV
KFRAGASGADSSAKEIRRVGRDVHPNDEQLMRVAESQRDAARLADSDASRIEVVDGAFVF
VPQAQELVVDAADDVEDDEEMADVEEATEDDPVDRAMRVVAAAEDGLSDLDDEDDDDEAE
EQVVYPGNRSGSLPPTNFSSPNLSRSSSHYGSPAAPPRTAADLRQQLFASAAPIDPLSRP
DLRPSRSTSAALPAPPHASTSLASGAGPSIWAPATGHPAASLLPASSPSSAQFSSPHAQL
VTAHSFEAIPNLTHGSPAAKQAGWSTLPPASAGPPGLAGLAGAGLYGGAFAAPPLPRAHT
GPPGPAHHSPSASGFVASPPHAHPHTPLSTAFAGLAPHHHAAFAPIPGQGQTQNPFAPGF
VSGGWPAPNSGGGGRGNG