Protein Info for mRNA_1996 in Rhodosporidium toruloides IFO0880

Name: 10364
Annotation: KOG0379 Kelch repeat-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF13415: Kelch_3" amino acids 28 to 84 (57 residues), 34.2 bits, see alignment E=7.2e-12 amino acids 99 to 150 (52 residues), 22.3 bits, see alignment 3.9e-08 PF13418: Kelch_4" amino acids 142 to 187 (46 residues), 34.1 bits, see alignment 6.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>mRNA_1996 KOG0379 Kelch repeat-containing proteins (Rhodosporidium toruloides IFO0880)
MPTLTASWRRIATLDTLQRSSHSLAVAGGKAYIFGGELKPRQPVDADVHVLDVEDGSLST
LSSATSSSTTSPWPPARVGAALTSLSTSSTSLSTSSTSLYLWGGRGGKDMSALTSDSNSI
WKFDTREEKWEVVETGGERPEGRSYHSMCAMGDTLYLHAGCPSTGRLSTLHSLSLSTLSW
SALPSAPEPGRGGTVLTALPGGQFLARFGGFAGYELGGLDVFNVRRKEWTSVEAAIEGGG
EGPPKRSVHAFVGLRNELDLGDGSGKKVVALMAMGEREAAPKELGHDGAGFFHSDSYALL
SHSSSPSALPEFSWLPLAPSGPSPPARGWLASALSPSGRGLVLHGGLDERNERLGDAWVL
EVRVE