Protein Info for mRNA_2003 in Rhodosporidium toruloides IFO0880

Name: 10371
Annotation: KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 792 transmembrane" amino acids 146 to 163 (18 residues), see Phobius details PF05686: Glyco_transf_90" amino acids 573 to 765 (193 residues), 42.9 bits, see alignment E=1.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (792 amino acids)

>mRNA_2003 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif (Rhodosporidium toruloides IFO0880)
MEPLNTGVGRRTSVLGDSATTPVSSLPGNGFNAPPSPWIDQSSRVPQTPRVGATPQLGRH
HRKSSTGSAFPPSPTSRWSSWFGGGKAGDGRKDRDGHLPTFGKRASAAPARPFYSEGAGR
RGTASPLILARNIALRPFYLLGRRGPLLPIIGFVTFILLYLTYSTSPSSQSVKLRVQGAV
GPYIPQRAADAIRWRGAGLKQAPLGADNLLGGAGGVGQQQVAKKAAPLKPEELPPVGIDS
RIKLEEGKPHPIPGLMAQAKQKWEDLKNSQSRTFAQAVKEYKRRNGRNPPKGFDRWYAFA
KAHKVLLIDEFDLIDKDLLMYRAFKPSVFRKRIGVMQEVVDTTWTIRVENGKVLREGPLA
HHDRARGVEFLMSRFAHFLPDMTIVYNGHDGARIAVAAEERIRLEELAKKGEYDDDEEPP
FWPKERGPFPHWGYPIFCPPGSPARELGFEGYGYHASLDATGYEMPAHPEGSIGSLVGDF
KGYMDVCYAPHYRHTHATTSWVFEHHPTRVMPLFTPGVQTTFGDVHALIVEQLELESQHD
PAWEDRPFTSLHWRGQTSGPLWESKTPWRTSQRSRLHLLSHQEDGFRNITITDENDVMRS
VEVPNYRLNPLFLDTGMVGPPVQCVKEDGTCDKMFEVFQGYDKRVSFDRASLYKFVLDVD
GNSWSGRFRRLMLSNAAVVKATVFPEFWTDWAIPWLHFIPMQVDYADMWDILAFYRGGIN
GEGAHDDLAKEIAVAGKEWVKQCYRWADLEAYQFRLLLEYGRLFNDETEPGSNDFTGDTS
VEPRWNGPVKLQ