Protein Info for mRNA_2011 in Rhodosporidium toruloides IFO0880

Name: 10379
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 transmembrane" amino acids 64 to 81 (18 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 131 to 149 (19 residues), see Phobius details amino acids 154 to 154 (1 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 224 to 244 (21 residues), see Phobius details amino acids 293 to 317 (25 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 382 to 404 (23 residues), see Phobius details amino acids 416 to 437 (22 residues), see Phobius details amino acids 449 to 469 (21 residues), see Phobius details PF07690: MFS_1" amino acids 97 to 432 (336 residues), 115.2 bits, see alignment E=1.7e-37

Best Hits

KEGG orthology group: None (inferred from 48% identity to scm:SCHCODRAFT_255062)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>mRNA_2011 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MSSSCSDSIDKKLEEGGPPLATLQPVNSVLPTLDEKDEDEAAKVVGFERNEYTEEEARAV
RRKVDRRVIPILAAVYFSQFFDKNSLTYSSVLQLPIKGEHYNLVSMAFYLGFMIFEIPTS
AIAQRFPLAKYLGVNMALWATFLILHAASAKFGFFFAMRFLLGVFECCVSPILIAMISAW
YPKHEQARRISVFYCMNGFAGMLGGLLAWATTFYTGKAVAHWRIFYFLMASLAFIVAACV
LLFLPDSPATANFLTEQEKVVVLERVRDNQTGTRNKKWKAYQAKEAVLDPKTWLLLLLTS
LSSVPNGGLATFSSILIKGFGFNTRQTLLLQIPNGAIAVVTTIGVCYLADRYAMRMLPIL
IAVIPTIVGAALMVALPHNKAASMVGILLAQTYGSSLALLYAWTTTNTGSSTKKSTVNAM
FMVTFGLANILGTQIFQARDAPGYTPGKIVVLALFSFMLPTVFAMRWYTTYLNKQKARKL
AALVEEKGWTEEDVRREAAKAAVLDLTDRENPFHSYIS