Protein Info for mRNA_2024 in Rhodosporidium toruloides IFO0880

Name: 10392
Annotation: K15979 SND1 staphylococcal nuclease domain-containing protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 935 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00565: SNase" amino acids 404 to 513 (110 residues), 26.9 bits, see alignment E=5.9e-10 amino acids 573 to 673 (101 residues), 75.2 bits, see alignment E=5.7e-25 PF00567: TUDOR" amino acids 695 to 823 (129 residues), 78.8 bits, see alignment E=3.6e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (935 amino acids)

>mRNA_2024 K15979 SND1 staphylococcal nuclease domain-containing protein 1 (Rhodosporidium toruloides IFO0880)
MSAQEAPASLAAIAKSVLSGDTIVLRGKVVQPNALPREKVLHLADLTAPRLGSRDREDEP
WAFESRDFLRSLVVGKEVSFSISYTVPSASNPSQPLEFGIVYVINPTDGSELDVAAELVR
SGWAKVRDSSKRDQAHGDSEDGQAVAQRRAYLRDLEEEAKIVGRGLWSSDRAPQRQVDYM
MPEDPVAFLQQYKGKSLDAIVEGVTNGSQVRVRLLLSPEHHQMINLGIAGIRAPRSGNLS
GREELQGEELGDESRFFVESRLLQRLIKVTILSLPTPTPAPASLSNGSASSASQQPQQVS
LFLGTVHHPAGNIAALLMSVGLARIVDWHAGFLASSPTPNMMSELRRGELEAKANRRGLF
KDAVMPATNGAGSSAAKGFTAIVTRVWGADMLSIVKEGESTERRVQLASVRQPRPSDAKL
AGLQLEGKEMLRKKLIGKPVNVVIDYVKPAEGDYEERECATVRLPNGQNVAEVLVERGLL
GVLRHRQGDDQRSSDYDRLMAAEARAIDDKRGIHSGKEFPAPRIVDASESAHKAAPFLSQ
FKRMGRFPAVVDYVASGSRFKIWVPKQDAKLTLVLSQIRAPRTARNASEKSEPYGTEAAT
FSSRRLLQRDVEVQVEATDKSGGFIGRLFHNGQDVAAALVREGLARVDEYSNAKELWTAQ
EEAQKARKNLWSKYDPEAEALANGDASASGPSVQPRKEYVDVVVSEVRGGTETEPFRFAV
QILQNGGIPELEKLMSDLTVFHKEADVTPAGFTPRSGELVSAQFSVDNAWYRAKVRKSNP
AKKQAEVLYIDYGNVEVLPFSRLRPLAAQFKSLEGQAKEATLSFVSLLDWRTDYGADSIE
RFREICEGQQLVANIDAREANLLHLSLFDPADPNSLSAHENSINVQLVREGLARIDQRSR
LRAAYPQVVKALDAAKDEARRRRLGAYEMGDILED