Protein Info for mRNA_2027 in Rhodosporidium toruloides IFO0880

Name: 10395
Annotation: K07208 RHEB Ras homolog enriched in brain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 TIGR00231: small GTP-binding protein domain" amino acids 14 to 173 (160 residues), 91 bits, see alignment E=3.5e-30 PF00025: Arf" amino acids 14 to 174 (161 residues), 29.6 bits, see alignment E=1.1e-10 PF00071: Ras" amino acids 17 to 178 (162 residues), 162.5 bits, see alignment E=1.7e-51 PF08477: Roc" amino acids 17 to 131 (115 residues), 59.5 bits, see alignment E=9.4e-20 PF00009: GTP_EFTU" amino acids 47 to 177 (131 residues), 32.6 bits, see alignment E=1.5e-11

Best Hits

Swiss-Prot: 63% identical to RHB1_SCHPO: GTP-binding protein rhb1 (rhb1) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K07208, Ras homolog enriched in brain (inferred from 63% identity to spo:SPBC428.16c)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>mRNA_2027 K07208 RHEB Ras homolog enriched in brain (Rhodosporidium toruloides IFO0880)
MSSLTPSGKVIGPKQRKVALLGSRSVGKSSLTVQFVDQHFVDSYYPTIENTFQKLVKHKG
QEYQLDIIDTAGQDEFSILSSRHAVGLHGWILVYSVSSRSSFEMCSIIREKILNYTGRES
VPMVLVGNKSDLAVQRQVTKEEGAALAASWGSTAFLETSARTGENVQRVFEQIVVQIEAE
LNPAPAPAQKGGCLLM