Protein Info for mRNA_2029 in Rhodosporidium toruloides IFO0880

Name: 10397
Annotation: K07088 K07088 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 106 to 129 (24 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 317 to 337 (21 residues), see Phobius details PF03547: Mem_trans" amino acids 14 to 339 (326 residues), 46.2 bits, see alignment E=1.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>mRNA_2029 K07088 K07088 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MTTPGVRELIWLSVKPLIRIAIPAAVGFTLVKRKLFPGEGTKALSLLIINFTLPCLLFSK
IVPSFTPDDVHALGPIILAAFFYQALPGVLGVLARAVTETPHCFRYGILFAYMFGNWGDL
PTAVVYSIAANAPFNGASDEALGIAYVSGFILVNYISSFPLQGLRLVQVDYHHPPNPPRL
RSMATQTDSDAPCVPTTAPITGLSTSDCPPLETVPTNLSIRSAHTQADQAAPPLDAQAST
SSLSQQPSTTIRILDSIWRLLRPIVTSLPTMVVLSALIIALIPDLRVLFVPPTSSGASFA
PNAPDSLPPLAVLNDTASFAGVASVPLGHIVLGTSVARFDPRNRC