Protein Info for mRNA_2033 in Rhodosporidium toruloides IFO0880

Name: 10401
Annotation: K09595 HM13 minor histocompatibility antigen H13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 256 to 279 (24 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details amino acids 328 to 346 (19 residues), see Phobius details PF04258: Peptidase_A22B" amino acids 60 to 356 (297 residues), 246.5 bits, see alignment E=2.1e-77

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>mRNA_2033 K09595 HM13 minor histocompatibility antigen H13 (Rhodosporidium toruloides IFO0880)
MSSAAGLYQSYAALLAGALGPIWAGAHASLVMPKGEKRKLRKLEAKDGKEDADEEEEDED
EDVERLTREDAYWFPILGSCVLLGLFLLFKYVDKALLNKILGWYLAAMAVAGLARSGVKL
ARRVLGERRSRRLDKWRLKLTKNSNEHSTFSFTSLHLYCIPLAVALSASQMYTGNWILSN
LVALSFAFNAISLLYLDSFATGSILLAGLFVYDIWWVFGSKAVFGKGANVMVDVATSFEA
PIKIVFPKDLARGRDFTLLGLGDIVLPGVFLALALRFDYHLALKRASVPFRPSRAFPKPY
FLTCFVAYILGLATTISIIHTFRAAQPALLYLSPACILSVSLCAVVRGEWGEVWGYLDGE
GDERERREREEKEKKEKEKVGEKEGREEDAKDEPAGPVGEDATRE