Protein Info for mRNA_2049 in Rhodosporidium toruloides IFO0880

Name: 10417
Annotation: K07565 NIP7 60S ribosome subunit biogenesis protein NIP7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 PF17833: UPF0113_N" amino acids 2 to 83 (82 residues), 94.8 bits, see alignment E=4e-31 PF03657: UPF0113" amino acids 96 to 175 (80 residues), 94.3 bits, see alignment E=4.5e-31

Best Hits

Swiss-Prot: 66% identical to NIP7_SCHPO: 60S ribosome subunit biogenesis protein nip7 (nip7) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K07565, 60S ribosome subunit biogenesis protein NIP7 (inferred from 74% identity to cci:CC1G_01723)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (180 amino acids)

>mRNA_2049 K07565 NIP7 60S ribosome subunit biogenesis protein NIP7 (Rhodosporidium toruloides IFO0880)
MRPLTESETKALFSKLANYLGPNLVHLVDTPDDPHVFRLHRSRVYYIRESLIRHAISVPR
ANLISLGVCLGKFSKTEKFRLHVTALDVLGRWAKHKVWIKPNGEMPFLYGNHVVKAHIGK
TSEDITEHQGVVVYSMNDIPLGFGVTARSTVDTRKVDPTSIVVFNQADVGEYLRDEDTLF