Protein Info for mRNA_2072 in Rhodosporidium toruloides IFO0880

Name: 10440
Annotation: KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF01399: PCI" amino acids 148 to 242 (95 residues), 36.1 bits, see alignment E=3.9e-13

Best Hits

Predicted SEED Role

"proteasome regulatory subunit Rpn9" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (292 amino acids)

>mRNA_2072 KOG2908 26S proteasome regulatory complex, subunit RPN9/PSMD13 (Rhodosporidium toruloides IFO0880)
MERGHFLLLLGQPEAAKEAMDQCQKVLDQLDSVDLAVHASFYRVSGDYWKAKAEFADYYR
NSLLYLACIDIDRDLTQDERAERARDLGIAALLGESLYNFGELVRRAHHSSARFSISAAL
SWSEGVSWFTQLLHPVLDSLKGTPNEYIRSLLFAFNSGDIDKFQSLIPELEKEPYLLQNL
NTLRQKICVLALIEAVFKRPIQDRVALPFSIIAKEAQVPVDEVEHLLMKALMLNLIRGTL
DACSSVASITWVQPRVLDKTQIGGLKDRLGDWADKVQAQGAFARGVAPELFA