Protein Info for mRNA_2084 in Rhodosporidium toruloides IFO0880

Name: 10452
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 380 to 405 (26 residues), see Phobius details amino acids 417 to 436 (20 residues), see Phobius details amino acids 447 to 466 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 17 to 477 (461 residues), 367.8 bits, see alignment E=4.3e-114 PF00083: Sugar_tr" amino acids 23 to 481 (459 residues), 362.6 bits, see alignment E=3.3e-112 PF07690: MFS_1" amino acids 26 to 425 (400 residues), 74.9 bits, see alignment E=6e-25

Best Hits

KEGG orthology group: None (inferred from 54% identity to cci:CC1G_07797)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>mRNA_2084 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MVAPKRSLLTKFTRNQYLVGSLPTLGGLIFGLDISSMSAQLSNPYYLETFNHPDSTLQGL
INAVMPLGSFFGALFNSYLCDLIGRKWCIIISGWLWVIGAIVQSTAKNVGALMGGRVVAG
LAVGLASAIVTIYQAEITKPQLRGRIVSVQQLAIIVGIAVQYFIQFGFSYLESDKSFRIP
WALQLIPGAILGSLMFIFPESPRWLMDHGRDDEALQILADVHAAGDTEDALVQLEFSEIK
RQIAFDNQQGAKSYLDLLKPDVRLRVFLGCADQMWSQLSGMNVMMYYVVYVFQGAGLQGR
RAELIASSVQYALAVVCTLPAVIWLDKIGRRPLLVGGSAAMATCLMIVGALQKTLGHKIE
GAEAAATTTWVVTGHKSGSYAIIVFSYLFVCSFSATLGPCSWTYASEIFPTRVRGKAVSF
ATASNWIFNFILSMTTPPAFRNIQYRVYFLYGTFNICSFLHFFLMYPETKGRTLEEMEEI
FDGTNTFTAWRVPPAKGVKNVTDLES