Protein Info for mRNA_2111 in Rhodosporidium toruloides IFO0880

Name: 10479
Annotation: K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 PF00179: UQ_con" amino acids 10 to 161 (152 residues), 154.8 bits, see alignment E=6e-50

Best Hits

Swiss-Prot: 64% identical to UBC15_SCHPO: Ubiquitin-conjugating enzyme E2 15 (ubc15) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K10575, ubiquitin-conjugating enzyme E2 G1 [EC: 6.3.2.19] (inferred from 75% identity to scm:SCHCODRAFT_85970)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 6.3.2.19

Use Curated BLAST to search for 6.3.2.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>mRNA_2111 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 (Rhodosporidium toruloides IFO0880)
MASSSAALQLTRQLNQLRKHPVEGFSAGLVDDDNVFEWEITIFGPPDTLYEGGFLRAVMS
FPPDFPLRPPKMRFLTEMWHPNIYKNGEVCISILHEPGVDQYGYEDAGERWLPVHTVESI
LISVVSLLSQDTPDINSPANVDAAKEVREDIAGYRKKVRRLVRRSAEEGF