Protein Info for mRNA_2152 in Rhodosporidium toruloides IFO0880

Name: 10520
Annotation: KOG2887 Membrane protein involved in ER to Golgi transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 67 to 93 (27 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 157 to 183 (27 residues), see Phobius details PF04178: Got1" amino acids 78 to 187 (110 residues), 118.1 bits, see alignment E=1.4e-38

Best Hits

KEGG orthology group: None (inferred from 58% identity to lbc:LACBIDRAFT_399531)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>mRNA_2152 KOG2887 Membrane protein involved in ER to Golgi transport (Rhodosporidium toruloides IFO0880)
MSEQSFRQNLQGFRWAQGVTDDSQSQPSEQSPFARFTSALSGGIPLRSNERTNEEEAYFA
LSRWERFVGFLMCIAGAAACFAIAFFVGLPLLALKPRKFVLSFTLGSVLFMAGFAILQGP
LAHLKHIFSSERLPFTAAYFGSLILTLIFALVKQSYLGTLVCAIVQCFALVAYFVSYFPG
GWATLSFGSRMAMRGASSYLPV