Protein Info for mRNA_2161 in Rhodosporidium toruloides IFO0880

Name: 10529
Annotation: K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 transmembrane" amino acids 58 to 82 (25 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 128 to 152 (25 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 285 to 304 (20 residues), see Phobius details amino acids 330 to 355 (26 residues), see Phobius details amino acids 411 to 433 (23 residues), see Phobius details amino acids 439 to 459 (21 residues), see Phobius details amino acids 471 to 490 (20 residues), see Phobius details amino acids 515 to 533 (19 residues), see Phobius details TIGR00801: uracil-xanthine permease" amino acids 61 to 500 (440 residues), 344.6 bits, see alignment E=4.2e-107 PF00860: Xan_ur_permease" amino acids 66 to 483 (418 residues), 212.1 bits, see alignment E=5.5e-67

Best Hits

Swiss-Prot: 46% identical to YI31_SCHPO: Putative purine permease C1399.01c (SPAC1399.01c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K03458, nucleobase:cation symporter-2, NCS2 family (inferred from 46% identity to ncr:NCU06918)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (581 amino acids)

>mRNA_2161 K03458 TC.NCS2 nucleobase-cation symporter-2, NCS2 family (Rhodosporidium toruloides IFO0880)
MAARVAMDDASSAFSNDRLFRKISPRDLVTRNFWLGDYDYRALLSFRSRKLPFFAPNAPL
PAVLALILGLQHCLAMVGGLVVPPLLLGGAAGAALEPAQQSYLVSAALIFCGLGTILQVS
RIPLGKGYYLGSGVLNVVGSSFAFVSSALAFINNQYTREGGLCSFAADGSKLSCPEAYGA
VIGTASVVGPIAVLLSFTPPRVLRKIFTPLVTGSILLMIGLSLMGSGMTNWAGGSSCQSG
GLCPNASAPHAAPWGSPRLIGLGFLVWVSILIIDIFGPPIAKNMSAMLGLIIGMIVAGAI
GYFQTSAFDSAPVITFLWVHRFPLSVRGELVLPFIASYLVVISEGVGNITATCAASGYPV
KGPRYASHVQGGLTSDALLSCISGLATVPPSTTFSQNVSILSLSQNASRISGYVCGVLLI
LFGLFGKIAAVWVALPAPLIGGLTVFLFASVAVAGLRILAGLNWTRRTRFIATAALSLGF
ADITTPGWFSNFFTYAGPNHALRGFLDALTLIVEESYLITLLLAVPLQFIVPLGEDDLEH
QRAEEEEEVLGSKTSKSRLEYEVERVPHGDEEMALEAVDRK