Protein Info for mRNA_2192 in Rhodosporidium toruloides IFO0880

Name: 10560
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 877 transmembrane" amino acids 278 to 296 (19 residues), see Phobius details amino acids 356 to 364 (9 residues), see Phobius details PF00172: Zn_clus" amino acids 17 to 56 (40 residues), 23.3 bits, see alignment 2.8e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (877 amino acids)

>mRNA_2192 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MAEGRSEVVLLPERSARSCTECARRKTACDKNLPCGACVKRGMSSSCTSAPTKRKKPTVD
PARELGQRQTAALEELRLFRTTLDSLKARLPAIEFFIANSNLKDENSAELDAIVKTFGDP
VTELTGPREPLASTSAAPSGSEPPTKRTRLLPPKQEPDEGEAGVEASVNLEFFALGRPRV
WTESNVAAAPSNEDDGLSSPSHRLAILPPEGQPDSPVSMFPNGQALFDAAPTPDQEDIVF
RQGLERYGFHHAVVHAPTFWSQLAAFRNLGDDRFERASLAWLSLYFALLAVSAKLVDREQ
QDAMGWTEAETSGAASRWFMCSIACLYRHNFLQLHDFSCLQAIAVLVLSGRDAGSATLIA
SLLSAGLSIAQDMGLQRLPSDEQWKEAMKGKPAGVRAKSLIDREIRKRVVWALVHSEWFA
IPFKGYSLLSRAQIVTPLALNATNEDLATGEVVNRPRDEYTDASWLLQYVEIGSHMANAF
ELTRSEKTTASQAYQRFIDEDKQLEGMLANLPAWLRTGGPTTGMPDCAEIMRSTYRIALQ
HKILSIHRPFLAKPSRATTHTFSRRRVIESARAILREAPACRDVRIWTVIYHISVASFSL
TLELYEQLKNPTADNEAIRNEIHQALPTLEGLKAASAIAERGLGLVLPLLADEKRLREEG
AGRKERRKGKGVAPTTPMGPATNPRNGIASTLDSTATTTPFAASTSPTSPFTALPDTNGG
SPFGHASDPSAFPFPSPSAFDAPAGGMPHQGYPYPVPPWFYGEHYLYSHLSTLDGAPGGA
GPSASMPPMSSGAPYSSFPGMAGLGLGGPSGMATSGGAGIGGGPAGWALPPLPPAAFGSA
LGWDWSSLGGAGGGPGSAGGQAGEGSPAGSGREGDGL